Update runtimes python packages

Author: atheo89

runtimes/datascience/ubi9-python-3.11/Pipfile

@@ -7,41 +7,43 @@ name = "pypi"
 
 [packages]
 # Datascience and useful extensions
-boto3 = "~=1.34.50"
-kafka-python = "~=2.0.2"
-matplotlib = "~=3.8.3"
-numpy = "~=1.26.4"
-pandas = "~=2.2.0"
-plotly = "~=5.20.0"
-scikit-learn = "~=1.4.0"
-scipy = "~=1.12.0"
-skl2onnx = "~=1.16.0"
-codeflare-sdk = "~=0.19.1"
-memray = "~=1.10.0"  # any version above this would cause issue with rich package
+boto3 = "~=1.35.14"
+kafka-python-ng = "~=2.2.2"
+matplotlib = "~=3.9.2"
+numpy = "~=2.1.0"
+pandas = "~=2.2.2"
+plotly = "~=5.23.0"
+scikit-learn = "~=1.5.1"
+scipy = "~=1.14.1"
+skl2onnx = "~=1.17.0"
+onnxconverter-common = "~=1.13.0" # Required for skl2onnx, as upgraded version is not compatible with protobuf
+codeflare-sdk = "~=0.18.0"
+
 # DB connectors
-pymongo = "~=4.6.2"
-psycopg = "~=3.1.18"
+pymongo = "~=4.8.0"
+psycopg = "~=3.2.1"
 pyodbc = "~=5.1.0"
-mysql-connector-python = "~=8.3.0"
+mysql-connector-python = "~=9.0.0"
+
 # This is a comprehensive list of python dependencies that Elyra requires to execute Jupyter notebooks.
-ipykernel = "==6.13.0"
-ipython = "==8.10.0"
-ipython-genutils = "==0.2.0"
-jinja2 = "==3.1.4"
-jupyter-client = "==7.3.1"
-jupyter-core = "==4.11.2"
-MarkupSafe = "==2.1.1"
-minio = "==7.1.15"
-nbclient = "==0.6.3"
-nbconvert = "==7.1.0"
-nbformat = "==5.4.0"
-papermill = "==2.3.4"
-pyzmq = "==24.0.1"
-prompt-toolkit = "==3.0.30"
-requests = "==2.31.0"
-tornado = "==6.3.3"
-traitlets = "==5.1.1"
-urllib3 = "==1.26.18"
+ipykernel = "~=6.29.5"
+ipython = "~=8.27.0"
+ipython-genutils = "~=0.2.0"
+jinja2 = "~=3.1.4"
+jupyter-client = ">=8.6.3"
+jupyter-core = "~=5.7.2"
+MarkupSafe = "~=2.1.5"
+minio = "~=7.2.8"
+nbclient = "~=0.10.0"
+nbconvert = "~=7.16.4"
+nbformat = "~=5.10.4"
+papermill = "~=2.6.0"
+pyzmq = "~=26.2.0"
+prompt-toolkit = "~=3.0.47"
+requests = "~=2.32.3"
+tornado = "~=6.4.1"
+traitlets = "~=5.14.3"
+urllib3 = "~=1.26.20"
 
 [requires]
 python_version = "3.11"

runtimes/datascience/ubi9-python-3.11/Pipfile.lock

@@ -1,24 +1,24 @@
 # Copied from: https://github.com/elyra-ai/elyra/blob/main/etc/generic/requirements-elyra.txt
 
 # This is a comprehensive list of python dependencies that Elyra requires to execute Jupyter notebooks.
-ipykernel==6.13.0
-ipython==8.10.0
+ipykernel==6.29.5
+ipython==8.27.0
 ipython-genutils==0.2.0
 jinja2==3.1.4
-jupyter-client==7.3.1
-jupyter-core==4.11.2
-MarkupSafe==2.1.1
-minio==7.1.15
-nbclient==0.6.3
-nbconvert==7.1.0
-nbformat==5.4.0
-papermill==2.3.4
-pyzmq==24.0.1
-prompt-toolkit==3.0.30
-requests==2.31.0
-tornado==6.3.3
-traitlets==5.1.1
-urllib3==1.26.9
+jupyter-client==8.6.3
+jupyter-core==5.7.2
+MarkupSafe==2.1.5
+minio==7.2.8
+nbclient==0.10.0
+nbconvert==7.16.4
+nbformat==5.10.4
+papermill==2.6.0
+pyzmq==26.2.0
+prompt-toolkit==3.0.47
+requests==2.32.3
+tornado==6.4.1
+traitlets==5.14.3
+urllib3==2.2.3
 #
 # These excluded are transitive dependencies of the included python packages.
 #ansiwrap==0.8.4

runtimes/datascience/ubi9-python-3.11/utils/requirements-elyra.txt

@@ -7,24 +7,24 @@ name = "pypi"
 
 [packages]
 # This is a comprehensive list of python dependencies that Elyra requires to execute Jupyter notebooks.
-ipykernel = "==6.13.0"
-ipython = "==8.10.0"
-ipython-genutils = "==0.2.0"
-jinja2 = "==3.1.4"
-jupyter-client = "==7.3.1"
-jupyter-core = "==4.11.2"
-MarkupSafe = "==2.1.1"
-minio = "==7.1.15"
-nbclient = "==0.6.3"
-nbconvert = "==7.1.0"
-nbformat = "==5.4.0"
-papermill = "==2.3.4"
-pyzmq = "==24.0.1"
-prompt-toolkit = "==3.0.30"
-requests = "==2.31.0"
-tornado = "==6.3.3"
-traitlets = "==5.1.1"
-urllib3 = "==1.26.18"
+ipykernel = "~=6.29.5"
+ipython = "~=8.27.0"
+ipython-genutils = "~=0.2.0"
+jinja2 = "~=3.1.4"
+jupyter-client = "~=8.6.3"
+jupyter-core = "~=5.7.2"
+MarkupSafe = "~=2.1.5"
+minio = "~=7.2.8"
+nbclient = "~=0.10.0"
+nbconvert = "~=7.16.4"
+nbformat = "~=5.10.4"
+papermill = "~=2.6.0"
+pyzmq = "~=26.2.0"
+prompt-toolkit = "~=3.0.47"
+requests = "~=2.32.3"
+tornado = "~=6.4.1"
+traitlets = "~=5.14.3"
+urllib3 = "~=2.2.3"
 
 [requires]
 python_version = "3.11"

runtimes/minimal/ubi9-python-3.11/Pipfile

@@ -1,24 +1,24 @@
 # Copied from: https://github.com/elyra-ai/elyra/blob/main/etc/generic/requirements-elyra.txt
 
 # This is a comprehensive list of python dependencies that Elyra requires to execute Jupyter notebooks.
-ipykernel==6.13.0
-ipython==8.10.0
+ipykernel==6.29.5
+ipython==8.27.0
 ipython-genutils==0.2.0
 jinja2==3.1.4
-jupyter-client==7.3.1
-jupyter-core==4.11.2
-MarkupSafe==2.1.1
-minio==7.1.15
-nbclient==0.6.3
-nbconvert==7.1.0
-nbformat==5.4.0
-papermill==2.3.4
-pyzmq==24.0.1
-prompt-toolkit==3.0.30
-requests==2.31.0
-tornado==6.3.3
-traitlets==5.1.1
-urllib3==1.26.9
+jupyter-client==8.6.3
+jupyter-core==5.7.2
+MarkupSafe==2.1.5
+minio==7.2.8
+nbclient==0.10.0
+nbconvert==7.16.4
+nbformat==5.10.4
+papermill==2.6.0
+pyzmq==26.2.0
+prompt-toolkit==3.0.47
+requests==2.32.3
+tornado==6.4.1
+traitlets==5.14.3
+urllib3==2.2.3
 #
 # These excluded are transitive dependencies of the included python packages.
 #ansiwrap==0.8.4

runtimes/minimal/ubi9-python-3.11/Pipfile.lock

@@ -12,45 +12,48 @@ name = "pytorch"
 
 [packages]
 # PyTorch packages
-tensorboard = "~=2.16.2"
-torch = {version = "~=2.2.1", index = "pytorch"}
-torchvision = {version = "~=0.17.1", index = "pytorch"}
+tensorboard = "~=2.17.1"
+torch = {version = "~=2.4.0", index = "pytorch"}
+torchvision = {version = "~=0.19.0", index = "pytorch"}
+
 # Datascience and useful extensions
-boto3 = "~=1.34.50"
-kafka-python = "~=2.0.2"
-matplotlib = "~=3.8.3"
-numpy = "~=1.26.4"
-pandas = "~=2.2.0"
-plotly = "~=5.20.0"
-scikit-learn = "~=1.4.0"
-scipy = "~=1.12.0"
-skl2onnx = "~=1.16.0"
-codeflare-sdk = "~=0.19.1"
-memray = "~=1.10.0"  # any version above this would cause issue with rich package
+boto3 = "~=1.35.14"
+kafka-python-ng = "~=2.2.2"
+matplotlib = "~=3.9.2"
+numpy = "~=2.1.0"
+pandas = "~=2.2.2"
+plotly = "~=5.23.0"
+scikit-learn = "~=1.5.1"
+scipy = "~=1.14.1"
+skl2onnx = "~=1.17.0"
+onnxconverter-common = "~=1.13.0" # Required for skl2onnx, as upgraded version is not compatible with protobuf
+codeflare-sdk = "~=0.18.0"
+
 # DB connectors
-pymongo = "~=4.6.2"
-psycopg = "~=3.1.18"
+pymongo = "~=4.8.0"
+psycopg = "~=3.2.1"
 pyodbc = "~=5.1.0"
-mysql-connector-python = "~=8.3.0"
+mysql-connector-python = "~=9.0.0"
+
 # This is a comprehensive list of python dependencies that Elyra requires to execute Jupyter notebooks.
-ipykernel = "==6.13.0"
-ipython = "==8.10.0"
-ipython-genutils = "==0.2.0"
-jinja2 = "==3.1.4"
-jupyter-client = "==7.3.1"
-jupyter-core = "==4.11.2"
-MarkupSafe = "==2.1.1"
-minio = "==7.1.15"
-nbclient = "==0.6.3"
-nbconvert = "==7.1.0"
-nbformat = "==5.4.0"
-papermill = "==2.3.4"
-pyzmq = "==24.0.1"
-prompt-toolkit = "==3.0.30"
-requests = "==2.31.0"
-tornado = "==6.3.3"
-traitlets = "==5.1.1"
-urllib3 = "==1.26.18"
+ipykernel = "~=6.29.5"
+ipython = "~=8.27.0"
+ipython-genutils = "~=0.2.0"
+jinja2 = "~=3.1.4"
+jupyter-client = "~=8.6.3"
+jupyter-core = "~=5.7.2"
+MarkupSafe = "~=2.1.5"
+minio = "~=7.2.8"
+nbclient = "~=0.10.0"
+nbconvert = "~=7.16.4"
+nbformat = "~=5.10.4"
+papermill = "~=2.6.0"
+pyzmq = "~=26.2.0"
+prompt-toolkit = "~=3.0.47"
+requests = "~=2.32.3"
+tornado = "~=6.4.1"
+traitlets = "~=5.14.3"
+urllib3 = "~=1.26.20"
 
 [requires]
 python_version = "3.11"