Install R-Package with version locks

Author: dibryant

rstudio/c9s-python-3.9/Dockerfile

@@ -31,8 +31,8 @@ RUN chmod -R a+w /usr/lib64/R/library
 ENV LIBLOC /usr/lib64/R/library
 
 # set User R Library path
-RUN mkdir -p /opt/app-root/src/Rpackages/4.3 && chmod -R a+w /opt/app-root/src/Rpackages/4.3
-ENV R_LIBS_USER /opt/app-root/src/Rpackages/4.3
+RUN mkdir -p /opt/app-root/bin/Rpackages/4.3 && chmod -R a+w /opt/app-root/bin/Rpackages/4.3
+ENV R_LIBS_USER /opt/app-root/bin/Rpackages/4.3
 
 WORKDIR /tmp/
 
@@ -50,9 +50,17 @@ COPY rsession.conf /etc/rstudio/rsession.conf
 # package installation 
 RUN dnf install -y libsodium-devel.x86_64 libgit2-devel.x86_64 libcurl-devel harfbuzz-devel.x86_64 fribidi-devel.x86_64 cmake "flexiblas-*" \
     && dnf clean all && rm -rf /var/cache/yum
-RUN R -e "install.packages('Rcpp')"
-
-# Install NGINX to proxy RStudio and pass probes check 
+# Install R packages
+RUN R -e "install.packages('remotes')"
+RUN R -e "require('remotes'); \
+    remotes::install_version('Rcpp','1.0.12'); \
+    remotes::install_version('tidyverse','2.0.0'); \
+    remotes::install_version('tidymodels','1.1.1'); \
+    remotes::install_version('plumber','1.2.1'); \
+    remotes::install_version('vetiver','0.2.5'); \
+    remotes::install_version('devtools','2.4.5');"
+
+# Install NGINX to proxy RStudio and pass probes check
 ENV NGINX_VERSION=1.24 \
     NGINX_SHORT_VER=124 \
     NGINX_CONFIGURATION_PATH=${APP_ROOT}/etc/nginx.d \

rstudio/c9s-python-3.9/run-rstudio.sh

@@ -16,7 +16,7 @@ fi
 
 # Create lib folders if it does not exist
 mkdir -p  /opt/app-root/src/Rpackages/4.3
-
+cp -r /opt/app-root/bin/Rpackages/4.3/* /opt/app-root/src/Rpackages/4.3/
 # rstudio terminal cant see environment variables set by the container runtime
 # (which breaks kubectl, to fix this we store the KUBERNETES_* env vars in Renviron.site)
 env | grep KUBERNETES_ >> /usr/lib64/R/etc/Renviron.site