Fix examples

[Yoshanuikabundi]

Examples are broken because they pull Toolkit 0.16.7 and openff-units 0.3.0, which are not compatible. Failure mode is extremely unusual; the second Python invocation that calls assign_partial_charges in a new environment or with a fresh ~/.cache/pint folder raises a cryptic error:

ToolkitWrapper around AmberTools version 23.6 <class 'openff.toolkit.utils.exceptions.IncompatibleUnitError'> : Unsupported unit passed to partial_charges setter. Found unit elementary_charge, expected elementary_charge

[github-actions]

This repository caches data generated from notebooks stored in other repositories in the _cookbook_data_* branches. Regenerating this cache takes about half an hour, so it is not done automatically in PRs. The current value of the cache from the main branch has been copied over to this PR's cache.

To regenerate the cache for this PR, create a comment on this PR consisting only of the string:

/regenerate-cache

[Yoshanuikabundi]

/regenerate-cache

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A workflow dispatched to regenerate the cookbook cache for this PR has just finished.

• Run ID: 14350414174
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• Job status: failure
• Notebooks status: 26 / 31 notebooks successfully executed (1 failures ignored)
• Failing notebooks:
  • openforcefield/openff-nagl/train-gnn-to-electric-field/train-gnn-to-electric-field.ipynb
  • openforcefield/openff-nagl/train-multi-objective-gnn/train-gnn-notebook.ipynb
  • openforcefield/openff-nagl/train-gnn-notebook/train-gnn-notebook.ipynb
  • openforcefield/openff-nagl/prepare-dataset/prepare-dataset.ipynb
  • [ignored] openforcefield/openff-toolkit/external/swap_amber_parameters/swap_existing_ligand_parameters.ipynb

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[Yoshanuikabundi]

/regenerate-cache

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• Notebooks status: 28 / 31 notebooks successfully executed (1 failures ignored)
• Failing notebooks:
  • openforcefield/openff-nagl/train-gnn-to-electric-field/train-gnn-to-electric-field.ipynb
  • openforcefield/openff-nagl/train-multi-objective-gnn/train-gnn-notebook.ipynb
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[Yoshanuikabundi]

/regenerate-cache

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A workflow dispatched to regenerate the cookbook cache for this PR has just finished.

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  • [ignored] openforcefield/openff-toolkit/external/swap_amber_parameters/swap_existing_ligand_parameters.ipynb

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[mattwthompson]

I think that the notebook that's dropped (but not in a release yet)

[Yoshanuikabundi]

Yep @mattwthompson thats correct. I think this is ready for review! (Or I'm happy to hero merge it)

[mattwthompson]

/regenerate-cache

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A workflow has been dispatched to regenerate the cookbook cache for this PR.

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[github-actions]

A workflow dispatched to regenerate the cookbook cache for this PR has just finished.

• Run ID: 14403863514
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• Job status: success
• Notebooks status: 30 / 31 notebooks successfully executed (1 failures ignored)

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  • [ignored] openforcefield/openff-toolkit/external/swap_amber_parameters/swap_existing_ligand_parameters.ipynb

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[mattwthompson]

I'm neutral on doing this before a toolkit release