v1.5.1 Archer

[mauromsl]

Release Notes

To run this upgrade, you can use Janeway's built-in script (.update.sh).

There are no backwards-incompatible changes introduced in this version.

What's Changed

• Exposes the XML url as a meta tag for indexers (Google Scholar) by @mauromsl in Exposes the XML url as a meta tag for indexers (Google Scholar) #3437
• Django three two rebase by @mauromsl in Django three two rebase #3438
• Bump django from 3.2.16 to 3.2.18 by @dependabot in Bump django from 3.2.16 to 3.2.18 #3439
• Bumps Janeway version to 1.5.0 by @mauromsl in Bumps Janeway version to 1.5.0 #3440
• Fix import error that happens on Python 3.10 by @joemull in Fix import error that happens on Python 3.10 #3451
• Remove flake8 overrides by @joemull in Remove flake8 overrides #3449
• Tweaks utils.0030 to avoid multiple leaf nodes error by @ajrbyers in Tweaks utils.0030 to avoid multiple leaf nodes error #3444
• Confirmable form bugfix by @joemull in Confirmable form bugfix #3452
• Fix crontab configuration bug by @joemull in Fix crontab configuration bug #3458
• Funder form fixes by @joemull in Funder form fixes #3454
• Journal Manager role cannot be granted #3463 allows staff to assign the journal-manager role. by @ajrbyers in #3463 allows staff to assign the journal-manager role. #3464
• Fixes an issue with redirection from middleware in Django 3.2 by @mauromsl in Fixes an issue with redirection from middleware in Django 3.2 #3467
• Updated the submission fundref page. by @ajrbyers in Updated the submission fundref page. #3469
• Remove old recaptcha initialiser by @mauromsl in Remove old recaptcha initialiser #3468
• Pre-sanitize MAIL.FROM before sending notifications by @mauromsl in Pre-sanitize MAIL.FROM before sending notifications #3470
• Fix value error sanitize email extra by @mauromsl in Fix value error sanitize email extra #3473
• Checking mailgun status will now use the instance's Mailgun API endpoint if it is set by @ajrbyers in Checking mailgun status will now use the instance's Mailgun API endpoint if it is set #3472
• [XSLT] Adds support for JATS code by @mauromsl in [XSLT] Adds support for JATS code #3496
• Recognises .avif as a valid image mime by @mauromsl in Recognises .avif as a valid image mime #3495
• [XSLT] Allows styled-content to declare custom CSS classes by @mauromsl in [XSLT] Allows styled-content to declare custom CSS classes #3494
• Adds support for fig/alt-text to JATS XSLT by @mauromsl in Adds support for fig/alt-text to JATS XSLT #3493
• Fixes an issue with full text search compatibility and Django 3.2 by @mauromsl in Fixes an issue with full text search compatibility and Django 3.2 #3516
• Fixes a number of issues with Janeway version missmatches by @mauromsl in Fixes a number of issues with Janeway version missmatches #3515
• Fixes a 500 raised error when a galley has no file associated with it by @mauromsl in Fixes a 500 raised error when a galley has no file associated with it #3514
• Fixes a typo in our Readme file by @joemull in Fixes a typo in our Readme file #3520
• Update requirements for Python 3.10 compatibility Update requirements for Python 3.10 #3524 by @joemull in Update requirements for Python 3.10 compatibility #3524 #3525
• Remove recaptcha_init templatetag by @yakky in Remove recaptcha_init templatetag #3507
• Added a janeway db bases SessionStore and overwrite clear_expired by @ajrbyers in Added a janeway db bases SessionStore and overwrite clear_expired #3476
• Fixes a bug with email notifications when declining a paper through draft decisions workflow by @mauromsl in Fixes a bug with email notifications when declining a paper through draft decisions workflow #3517
• Update docs/requirements.txt to pin a few module versions by @hardyoyo in Update docs/requirements.txt to pin a few module versions #3485
• Merge b_1_5_0 by @mauromsl in Merge b_1_5_0 #3532
• Bump sqlparse from 0.2.3 to 0.4.4 by @dependabot in Bump sqlparse from 0.2.3 to 0.4.4 #3499
• Bump django from 3.2.18 to 3.2.19 by @dependabot in Bump django from 3.2.18 to 3.2.19 #3539
• Updates the send email with template function to support plugins by @ajrbyers in Updates the send email with template function to support plugins #3492
• Peer review invite by @ajrbyers in Peer review invite #3490
• B 1 5 0 v2 by @mauromsl in B 1 5 0 v2 #3540
• 3316 improve sitemap generation by @ajrbyers in 3316 improve sitemap generation #3535
• Fixed an issue where From address was being encoded as a tuple on some email backends by @mauromsl in Fixed an issue where From address was being encoded as a tuple on some email backends #3551
• B 1 5 0 by @mauromsl in B 1 5 0 #3552
• src/repository/management/commands/generate_preprints.py doesn't currently work #3288 update generate_preprints command and tweaked preprint.html. by @ajrbyers in #3288 update generate_preprints command and tweaked preprint.html. #3443
• Unsubmitted articles visible in issue assignment interface #3188 issue_add_articles now uses the active_objects manager by @ajrbyers in #3188 issue_add_articles now uses the active_objects manager #3460
• Add "Edit Metadata" to navbar/"Logs, Documents and More" drop-down #3533 the Logs, Documents and More dropdown now has a link directly to the Edit Metadata page by @ajrbyers in #3533 the Logs, Documents and More dropdown now has a link directly to the Edit Metadata page #3534
• Preprints: Step 3 (upload/attach supp files) should support custom text #3404 adds some enhancements to the repository submission file upload by @ajrbyers in #3404 adds some enhancements to the repository submission file upload #3479
• Journals: Submitting authors see edit options for identifiers in dashboard view #3502 DOI edit and add buttons will no longer be shown to authors on the article metadata page. Text on the identifiers section has also been updated by @ajrbyers in #3502 DOI edit and add buttons will no longer be shown to authors on the article metadata page. Text on the identifiers section has also been updated #3513
• Adds a check_plugin_exists function to utils.plugins by @ajrbyers in Adds a check_plugin_exists function to utils.plugins #3553
• Disable is_secure URL builder checks when DEBUG is on by @mauromsl in Disable is_secure URL builder checks when DEBUG is on #3554
• 2 UX tweaks for review forms (hide both slug and form id in UI) #3491 editors will no longer see the Review Form ID field and the slug field has been removed entirely by @ajrbyers in #3491 editors will no longer see the Review Form ID field and the slug field has been removed entirely #3536
• Press managers can customise some elements of journal footers by @joemull in Press managers can customise some elements of journal footers #3531
• 3427 automated reminder help text has been update to make the function of the Review (Accepted) review type clearer by @ajrbyers in 3427 automated reminder help text has been update to make the function of the Review (Accepted) review type clearer #3538
• Increases the journal code CharField max_length to 40 by @ajrbyers in Increases the journal code CharField max_length to 40 #3546
• Peer review invite by @ajrbyers in Peer review invite  #3541
• Section IDs should not be visible to submitting authors #3289 remove ID from section str by @ajrbyers in #3289 remove ID from section __str__ #3459
• Fix a SASS bug that unset default colors on OLH theme by @joemull in Fix a SASS bug that unset default colors on OLH theme #3530
• Use raw ID fields for files in a few spots for quicker loading by @joemull in Use raw ID fields for files in a few spots for quicker loading #3527
• Fix bug that reloaded an email template without user confirming by @joemull in Fix bug that reloaded an email template without user confirming #3518
• Fix bug with section display on submissions page by @joemull in Fix bug with section display on submissions page #3523
• 3101 article figures now enlarge with lightbox as the default on-click effect by @ajrbyers in 3101 article figures now enlarge with lightbox as the default on-click effect #3537
• Add a test for whether /usr/bin/crontab exists, before attempting to run install_cron. Warn if crontab not found. by @hardyoyo in Add a test for whether /usr/bin/crontab exists, before attempting to run install_cron. Warn if crontab not found. #3461
• Updates the JATS 1.2 XML document with additional information by @ajrbyers in Updates the JATS 1.2 XML document with additional information #3506
• Make sure review visibility warning only shows up when it should by @joemull in Make sure review visibility warning only shows up when it should #3519
• Issue assignment clarity by @joemull in Issue assignment clarity #3511
• Modify article pages for all themes to support proofing accuracy by @joemull in Modify article pages for all themes to support proofing accuracy #3471
• Editors and Section Editors can now access the account API endpoint. by @ajrbyers in Editors and Section Editors can now access the account API endpoint. #3544
• set x-frame-options in janeway_global_settings.py by @hardyoyo in set x-frame-options in janeway_global_settings.py #3573
• Repository Search #3563 Repository search now uses the account names/institution for search by @ajrbyers in #3563 Repository search now uses the account names/institution for search #3564
• Uses Django's SQL compiler to sort FT search results by @mauromsl in Uses Django's SQL compiler to sort FT search results #3575
• Server Error raised when using journal search tool sorted by title #3561: Uses Django's SQL compiler to sort FT search results by @mauromsl in #3561: Uses Django's SQL compiler to sort FT search results #3576
• Workflow is incorrect when an article is fast accepted #1471 pass decisions through to the warning view so it can redirect the user properly by @ajrbyers in #1471 pass decisions through to the warning view so it can redirect the user properly #3570
• Bump requests from 2.25.1 to 2.31.0 by @dependabot in Bump requests from 2.25.1 to 2.31.0 #3566
• Revert unwanted nullable file field on Galley by @mauromsl in Revert unwanted nullable file field on Galley #3578
• Handle Galley file type changes typesetting#184 galley.type and galley.file.mime_type will now be synced when a galley.file changes by @ajrbyers in BirkbeckCTP/typesetting#184 galley.type and galley.file.mime_type will now be synced when a galley.file changes #3580
• Fix bug that prevented BookLink from loading in admin by @joemull in Fix bug that prevented BookLink from loading in admin #3583
• Repository: Stats not displaying on author dashboard item page #3559 Author preprint metrics summary accesses are now split into views and downloads across two charts. by @ajrbyers in #3559 Author preprint metrics summary accesses are now split into views and downloads across two charts. #3562
• B 1 5 0 by @mauromsl in B 1 5 0 #3590
• Fixes a bug where the footer in material theme would not be fixed at the bottom of the page by @mauromsl in Fixes a bug where the footer in material theme would not be fixed at the bottom of the page #3585
• Order news by sequence and display date by @gamboz in Order news by sequence and display date #3600
• Fixes an issue were email settings were empty on Docker by @mauromsl in Fixes an issue were email settings were empty on Docker #3619
• Allow use of bullet points in CMS pages and customised settings #2214: Re-instate default-li for submission items on material theme by @mauromsl in #2214: Re-instate default-li for submission items on material theme #3642
• Remove "Incomplete submissions" from repository manager by @alainna in Remove "Incomplete submissions" from repository manager #3626
• Bump django from 3.2.19 to 3.2.20 by @dependabot in Bump django from 3.2.19 to 3.2.20 #3623
• Fix bug that kept small caps from being applied by @joemull in Fix bug that kept small caps from being applied #3603
• Snapshot and update authors on acceptance before deposit Author metadata shared with crossref on acceptance before freezing author records #2702 by @joemull in Snapshot and update authors on acceptance before deposit #2702 #3592
• 2986 fixes an error that caused edit_metadata to fail when additional fields were present. by @ajrbyers in 2986 fixes an error that caused edit_metadata to fail when additional fields were present. #3568
• 965 the old submission_competing_interests has been removed, this is controlled by submission configuration by @ajrbyers in 965 the old submission_competing_interests has been removed, this is controlled by submission configuration #3569
• Cannot edit comments to editor #3348 comments to the editor field has been moved to the end of the submission flow by @ajrbyers in #3348 comments to the editor field has been moved to the end of the submission flow #3581
• Deprecate run_upgrade command by @joemull in Deprecate run_upgrade command  #3696
• Fix invalid anchor tag Invalid HTML in Material nav #3697 by @joemull in Fix invalid anchor tag #3697 #3698
• Add menu option for press-level media manager Media manager for press level #3144 by @joemull in Add menu option for press-level media manager #3144 #3699
• Modify funder help text in submission migrations by @joemull in Modify funder help text in submission migrations #3704
• Notifications for revisions complete are not being logged #3627 the email sent to editors when an author completes revisions is now a template and is logged correctly by @ajrbyers in #3627 the email sent to editors when an author completes revisions is now a template and is logged correctly #3655
• Review Form Preview #3618 the review preview form now renders correctly accounting for display settings by @ajrbyers in #3618 the review preview form now renders correctly accounting for display settings #3649
• Reviewers Recieve Permission Denied Under Revision #3616 reviewers can now access reviews in any of the accessible review stages. by @ajrbyers in #3616 reviewers can now access reviews in any of the accessible review stages. #3660
• Automated Reminders are not being logged against the article #3099 reminder emails are now logged by @ajrbyers in #3099 reminder emails are now logged #3648
• Spelling Error Anonimity -> Anonymity #3604 Updated spelling of anonimity to anonymity. by @ajrbyers in #3604 Updated spelling of anonimity to anonymity. #3613
• orphan articles (not associated with any journal) cause the /manager page to throw an error #3598 the press manager index no longer errors when an article is orphaned from its journal. by @ajrbyers in #3598 the press manager index no longer errors when an article is orphaned from its journal. #3614
• Upgrade materialize by @joemull in Upgrade materialize #3594
• Files display in Review #3586 fixes the display of the Review Files section when there are no files and its widescreen display by @ajrbyers in #3586 fixes the display of the Review Files section when there are no files and its widescreen display #3587
• Auto-generated table of contents for articles (TOCs) can now have HTML in them. by @ajrbyers in Auto-generated table of contents for articles (TOCs) can now have HTML in them. #3526
• Add preprint API endpoint by @hardyoyo in Add preprint API endpoint #3166
• Articles are not being rejected and notification emails are not being sent to authors when a draft decision to 'reject' is approved by editors #3665 the Draft Decisions model now uses the correct decision types. by @ajrbyers in #3665 the Draft Decisions model now uses the correct decision types. #3666
• Remove monkey patch of django.forms.field.Field in core.forms #870 removed the is_checkbox monkey patch by @ajrbyers in #870 removed the is_checkbox monkey patch #3615
• Rework article list as class-based view by @joemull in Rework article list as class-based view #3597
• 2445 review response letter & sharing peer reviews by @ajrbyers in 2445 review response letter & sharing peer reviews #3610
• Use django_countries library by @joemull in Use django_countries library #3582
• Use environment variables for defaults for the install_janeway management command by @hardyoyo in Use environment variables for defaults for the install_janeway management command #3324
• populate "add reviewer" with reviewers from previous rounds #2444 added a new setting that controls the appearance of a list of reviewers that have previously completed a review in a past round for the current article. by @ajrbyers in #2444 added a new setting that controls the appearance of a list of reviewers that have previously completed a review in a past round for the current article. #3591
• As an editor I'd like to see which sections are closed for submission #3652 when an editor views the submission form they will now see information about which sections are not open for public submission. by @ajrbyers in #3652 when an editor views the submission form they will now see information about which sections are not open for public submission. #3654
• Fixes an odd merge issue. by @ajrbyers in Fixes an odd merge issue. #3720
• Support copy-paste in rich-text fields and fine-tune editing window by @joemull in Support copy-paste in rich-text fields and fine-tune editing window #3446
• Password length requirement is displayed properly on all themes. by @ajrbyers in Password length requirement is displayed properly on all themes. #3700
• Checkbox toggles in All Settings cannot be updated as of 1.5 #3643 when editing a single setting using the edit_key view unchecking a boolean now works as expected. by @ajrbyers in #3643 when editing a single setting using the edit_key view unchecking a boolean now works as expected. #3651
• Email notifications about bounced emails are not logged #3240 when a mailgun email is logged as failed or bounced it will now send an email to the actor (if they are staff, editor or repo manger) and log that it was sent by @ajrbyers in #3240 when a mailgun email is logged as failed or bounced it will now send an email to the actor (if they are staff, editor or repo manger) and log that it was sent #3512
• Fix article list view access by @joemull in Fix article list view access #3723
• 3630 the Live Article link in LDM will now link to the remote url when is_remote and remote_url are set by @ajrbyers in 3630 the Live Article link in LDM will now link to the remote url when is_remote and remote_url are set #3650
• Pin urllib3<2 due to compatibility issues with requests by @mauromsl in Pin urllib3<2 due to compatibility issues with requests #3737
• Apply scrollbar to long unbroken MathJax lines MathML overflows article width #3753 by @joemull in Apply scrollbar to long unbroken MathJax lines #3753 #3754
• XSLT 1.5.1 Fixes & Updates by @mauromsl in XSLT 1.5.1 Fixes & Updates #3750
• Bump pillow from 9.4.0 to 10.0.1 by @dependabot in Bump pillow from 9.4.0 to 10.0.1 #3748
• Fix KeyError when logging with orcid and name is not publicly available by @mauromsl in Fix KeyError when logging with orcid and name is not publicly available #3758
• Bump pdfminer to fix bug with blank password on PDFs by @mauromsl in Bump pdfminer to fix bug with blank password on PDFs #3757
• Allow blank preprint version titles so that they can be edited in admin by @mauromsl in Allow blank preprint version titles so that they can be edited in admin #3759
• Revisiting copyediting once an article is published causes an error. #3716 next_workflow_element will no longer error out when an article is published. by @ajrbyers in #3716 next_workflow_element will no longer error out when an article is published. #3718
• 3705 Adds a signal that will create a directory in src/files when a new journal is created. by @ajrbyers in 3705 Adds a signal that will create a directory in src/files when a new journal is created. #3706
• Edit Copyedit Assignment form fails to save updates #3728 editing a copyedit assignment will now success and, if it fails, it will disply an error. by @ajrbyers in #3728 editing a copyedit assignment will now success and, if it fails, it will disply an error. #3729
• Problem adding articles to issues #3733 wording on the projected issue page has been updated, documentation for how this works has also been added. by @ajrbyers in #3733 wording on the projected issue page has been updated, documentation for how this works has also been added. #3734
• Edit Copyedit Assignment form fails to save updates #3728 when editing a frozen author record the Add Author button now works as expected. by @ajrbyers in #3728 when editing a frozen author record the Add Author button now works as expected. #3730
• Crossref deposits rejected by given lower version number generated from a localised datetime #3486 DOI batch deposit timestamps are now generated in the view using datetime rather than the now templatetag which uses timezone. by @ajrbyers in #3486 DOI batch deposit timestamps are now generated in the view using datetime rather than the now templatetag which uses timezone. #3721
• Removed light and wave effects from headers in the material theme. These serve no real purpose and stop users from copying the title text easily. by @ajrbyers in Removed light and wave effects from headers in the material theme. These serve no real purpose and stop users from copying the title text easily. #3668
• Explain in more detail how to 'merge users' #3684 the merge users documentation has been updated and now includes an animated gif. by @ajrbyers in #3684 the merge users documentation has been updated and now includes an animated gif. #3686
• Adds an edit metadata button to the unassigned article/editor assignment page. by @ajrbyers in Adds an edit metadata button to the unassigned article/editor assignment page. #3687
• Altmetric badges will now display as expected on the material theme. by @ajrbyers in Altmetric badges will now display as expected on the material theme. #3680
• Author review text will now display properly when checked by an editor by @ajrbyers in Author review text will now display properly when checked by an editor #3739
• Include GET parameters when redirecting after login GET parameters dropped during login #3701 by @joemull in Include GET parameters when redirecting after login #3701 #3702
• Ensure article titles are marked as safe consistently by @mauromsl in Ensure article titles are marked as safe consistently #3543
• When editing repository settings repository managers can choose to save and stay on the current page or save and move to the next step. by @ajrbyers in When editing repository settings repository managers can choose to save and stay on the current page or save and move to the next step. #3667
• As an editor I don't know when to use the Editor note field on revision requests #3487 when requesting revisions the Editor Note field is now optional and is no longer inserted into the outgoing request email. by @ajrbyers in #3487 when requesting revisions the Editor Note field is now optional and is no longer inserted into the outgoing request email. #3681
• notify_email.py error due to invalid characters being passed as the display-name part of a sender/recipient #3731 mailbox labels are now wrapped in quotes and sanitize_from is appllied to journal and user names by @ajrbyers in #3731 mailbox labels are now wrapped in quotes and sanitize_from is appllied to journal and user names #3762
• Cached Issue Display and Languages #3372 the issue title is now cached in all available languages, or the default if none are enabled. by @ajrbyers in #3372 the issue title is now cached in all available languages, or the default if none are enabled. #3663
• prevents None from appearing in Add Review Assignment by @hachacha in prevents None from appearing in Add Review Assignment #3764
• Repository comments will now display properly in the manager interface by @ajrbyers in Repository comments will now display properly in the manager interface #3647
• Added some info about OAI to docs by @ajrbyers in Added some info about OAI to docs #3636
• Placement and size of comments on repository with review #3423 moved comments box under preprint iframe. by @ajrbyers in #3423 moved comments box under preprint iframe. #3645
• 3638 orcid pattern update by @ajrbyers in 3638 orcid pattern update #3646
• Adds a new form and widget that implements CC and BCC fields for all emails by @mauromsl in Adds a new form and widget that implements CC and BCC fields for all emails #3121
• Bump version 1.5.1 by @mauromsl in Bump version 1.5.1 #3781

New Contributors

• @yakky made their first contribution in Remove recaptcha_init templatetag #3507

Full Changelog: v1.4.4...v1.5.1-RC-1

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This discussion was created from the release v1.5.1 Archer.