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@VeronicaMuthee VeronicaMuthee commented Oct 20, 2025

Summary

Update BasicLabTests OCL collection from v20 to v22 to include missing standardized CIEL laboratory test concepts for reference ranges work.

Changes

OCL Collection Update

  • Removed: openmrs_BasicLabTests_v20_autoexpand-20.2025-08-21_091732.zip
  • Added: openmrs_BasicLabTests_v22_autoexpand-22.2025-10-18_211604.zip

Concept Changes

Added (5 concepts):

  1. 1038 - Neisseria gonorrhoeae polymerase chain reaction, qualitative (Coded Test)
    • Qualitative PCR test for gonococcal infections
  2. 159650 - Cerebrospinal fluid appearance (Text Test)
    • Macroscopic CSF evaluation
  3. 161153 - Partial thromboplastin time (Numeric Test)
    • Measures intrinsic coagulation pathway
  4. 163001 - Indirect bilirubin in serum or plasma (Numeric Test)
    • Standardized indirect bilirubin measurement
  5. 170239 - Hemoglobin in umbilical cord blood (mg/mL) (Numeric Test)
    • Required for reference ranges work

Removed (9 concepts):
Local AMPATH concepts (IDs 4293-4303) superseded by standardized CIEL equivalents:

  • Direct bilirubin (4293)
  • Indirect bilirubin (4294) → replaced by 163001
  • Ionized calcium (4295)
  • Partial Thromboplastin Time (4296) → replaced by 161153
  • Serum magnesium (4297)
  • Cerebrospinal fluid test (4298) → replaced by 159650
  • Adrenocorticotropic hormone (4299)
  • Parathyroid hormone (4300)
  • SARS-CoV-2 Antigen RDT (4303)

Purpose

This update standardizes laboratory test concepts by migrating from local AMPATH concept IDs to internationally standardized CIEL concept IDs with proper terminology mappings. The new collection includes hemoglobin in umbilical cord blood (170239), which is specifically needed for the reference ranges work.

Technical Details

  • Collection size: 507 → 511 concepts (net +4)
  • Metadata version: v20 → v22
  • Standardization: Replaces local concepts with CIEL standards
  • Reference standards: Adds LOINC and SNOMED-CT mappings

- Added missing standardized CIEL laboratory test concepts
- Adds 5 new concepts including hemoglobin in umbilical cord blood (required for reference ranges work)
- Removes 9 local AMPATH concepts (4293-4303) superseded by CIEL standards
- Net change: 507 → 511 concepts (+4)

New concepts added:
- 1038: Neisseria gonorrhoeae polymerase chain reaction, qualitative
- 159650: Cerebrospinal fluid appearance
- 161153: Partial thromboplastin time
- 163001: Indirect bilirubin in serum or plasma
- 170239: Hemoglobin in umbilical cord blood (mg/mL)

Removed local AMPATH concepts:
- 4293-4300, 4303: Superseded by standardized CIEL equivalents
@denniskigen denniskigen force-pushed the VeronicaMuthee-patch-11 branch from 221fcb0 to 00cd99f Compare October 28, 2025 10:27
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LGTM. Thanks, @VeronicaMuthee!

@denniskigen denniskigen merged commit 9c85d0d into main Oct 28, 2025
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3 participants