04_14_pathwayGetInteractions.ttl

@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dcterms: <http://purl.org/dc/terms/>.
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix rel: <http://vocab.org/relationship/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix drugbank: <http://bio2rdf.org/drugbank_vocabulary:> .
@prefix sio: <http://semanticscience.org/resource/>
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix cheminf: <http://semanticscience.org/resource/> .
@prefix qudt: <http://qudt.org/1.1/schema/qudt#> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix cito: <http://purl.org/spar/cito/> .
@prefix wp: <http://vocabularies.wikipathways.org/wp#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix sioc: <http://sioc-project.org/ontology#> .

<#pathway> a api:API ;
        rdfs:label "Pathway"@en ;
        api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
        api:contentNegotiation api:parameterBased ;
        api:variable <#input> ;
	api:dataset <http://www.wikipathways.org> ;
	api:vocabulary <http://vocabularies.wikipathways.org/wp#> ;
	api:vocabulary <http://xmlns.com/foaf/0.1/> ;
	api:vocabulary <http://purl.org/dc/elements/1.1/> ;
	api:vocabulary <http://purl.org/dc/terms/> ;
	api:description "An API configuration to return information about pathways." ;
	api:endpoint [
		a api:ItemEndpoint ;
		api:name "Pathway Information: Get Interactions" ;
		api:description "A list of interactions that are part of the pathway specified.";
		api:uriTemplate "/pathway/getInteractions?uri={uri}" ;
	        api:itemTemplate "{uri}" ;
		api:exampleRequestPath "/pathway/getInteractions?uri=http%3A%2F%2Fidentifiers.org%2Fwikipathways%2FWP1008" ;
		api:viewer <#pathwayInteractionsViewer> ;
		api:defaultViewer <#pathwayInteractionsViewer> . ] .

<http://www.wikipathways.org> api:label "WikiPathways" .

<http://vocabularies.wikipathways.org/wp#> api:label "wikipathways" .
<http://xmlns.com/foaf/0.1/> api:label "foaf" .
<http://purl.org/dc/elements/1.1/> api:label "dc" .
<http://purl.org/dc/terms/> api:label "dcterms" .

<#input> api:name "uri" ;
	api:label "uri";
	api:value "A Pathway URI. e.g.: http://identifiers.org/wikipathways/WP1008" ;
	rdfs:range rdfs:Resource .

<#pathwayInteractionsViewer> a api:Viewer ;
	api:name "pathwayInteractionsViewer" ;
	api:template
"
?ops_item skos:exactMatch ?pw_uri .
?pw_uri sioc:latest_version ?rev .
?rev dc:title ?title ;
	dcterms:hasPart ?interaction ;
	dcterms:hasPart ?dir_interaction ;
	void:inDataset <http://www.wikipathways.org> .
?interaction a wp:Interaction ;
	wp:participants ?participants ;
        void:inDataset <http://www.wikipathways.org> .
?participants a ?part_type ;
	wp:participants ?c_part ;
	wp:source ?part_source ;
        wp:target ?part_target ;
        void:inDataset <http://www.wikipathways.org> .
?dir_interaction a wp:DirectedInteraction ;
	wp:source ?source ;
	wp:target ?target ;
        void:inDataset <http://www.wikipathways.org> .
?source a ?source_type ;
	wp:participants ?s_dir_c_part ;
	wp:source ?source_source ;
        wp:target ?source_target ;
        void:inDataset <http://www.wikipathways.org> .
?target a ?target_type ;
	wp:participants ?t_dir_c_part ;
	wp:source ?target_source ;
        wp:target ?target_target ;
	void:inDataset <http://www.wikipathways.org> .
?c_part a ?c_part_type ;
        void:inDataset <http://www.wikipathways.org> .
?s_dir_c_part a ?s_dir_c_part_type ;
        void:inDataset <http://www.wikipathways.org> .
?t_dir_c_part a ?t_dir_c_part_type ;
        void:inDataset <http://www.wikipathways.org> .
?part_source a ?part_source_type ;
        void:inDataset <http://www.wikipathways.org> .
?part_target a ?part_target_type ;
        void:inDataset <http://www.wikipathways.org> .
?source_source a ?source_source_type ;
        void:inDataset <http://www.wikipathways.org> .
?source_target a ?source_target_type ;
        void:inDataset <http://www.wikipathways.org> .
?target_source a ?target_source_type ;
        void:inDataset <http://www.wikipathways.org> .
?target_target a ?target_target_type ;
        void:inDataset <http://www.wikipathways.org> .
";
	api:where
"
GRAPH <http://www.wikipathways.org> {
	?rev dc:identifier ?pw_uri .
	?rev dc:title ?title .
	OPTIONAL {
		?interaction dcterms:isPartOf ?rev ;
			a wp:Interaction ;
			wp:participants ?participants .
		MINUS {	?interaction a wp:DirectedInteraction }
		MINUS {	?interaction a wp:ComplexBinding }
		MINUS {	[] wp:participants|wp:source|wp:target ?interaction }
		?participants a ?part_type_tmp .
		FILTER ( ?part_type_tmp != wp:DataNode || STRSTARTS( STR( ?part_type_tmp ), 'http://identifiers.org/wikipathways/WP' ) )
		OPTIONAL {
			?participants wp:participants ?c_part .
			MINUS {	?participants wp:source [] }
			?c_part a ?c_part_type .
			FILTER ( ?c_part_type != wp:DataNode || STRSTARTS( STR( ?c_part_type ), 'http://identifiers.org/wikipathways/WP' ) )
		}
		OPTIONAL {
			?participants wp:source ?part_source .
			?participants wp:target ?part_target .
			?part_source a ?part_source_type .
			?part_target a ?part_target_type .
			FILTER ( ?part_source_type != wp:DataNode || STRSTARTS( STR( ?part_source_type ), 'http://identifiers.org/wikipathways/WP' ) )
			FILTER ( ?part_target_type != wp:DataNode || STRSTARTS( STR( ?part_target_type ), 'http://identifiers.org/wikipathways/WP' ) )
			BIND ( true AS ?part_directed )
		}
	}
	OPTIONAL {
		?dir_interaction dcterms:isPartOf ?rev ;
		a wp:DirectedInteraction ;
		wp:source ?source ;
		wp:target ?target .
		MINUS {	[] wp:participants|wp:source|wp:target ?dir_interaction }
		?source a ?source_type_tmp .
		?target a ?target_type_tmp .
		FILTER ( ?source_type_tmp != wp:DataNode || STRSTARTS( STR( ?source ), 'http://identifiers.org/wikipathways/WP' ) )
		FILTER ( ?target_type_tmp != wp:DataNode || STRSTARTS( STR( ?target ), 'http://identifiers.org/wikipathways/WP' ) )
		OPTIONAL {
			?source wp:participants ?s_dir_c_part .
			MINUS {	?source wp:source [] }
			?s_dir_c_part a ?s_dir_c_part_type .
			FILTER ( ?s_dir_c_part_type != wp:DataNode || STRSTARTS( STR( ?s_dir_c_part ), 'http://identifiers.org/wikipathways/WP' ) )
		}
		OPTIONAL {
			?target wp:participants ?t_dir_c_part .
			MINUS {	?target wp:source [] }
			?t_dir_c_part a ?t_dir_c_part_type .
			FILTER ( ?t_dir_c_part_type != wp:DataNode || STRSTARTS( STR( ?t_dir_c_part ), 'http://identifiers.org/wikipathways/WP' ) )
		}
		OPTIONAL {
			?source wp:source ?source_source .
			?source wp:target ?source_target .
			?source_source a ?source_source_type .
			?source_target a ?source_target_type .
			FILTER ( ?source_source_type != wp:DataNode || STRSTARTS( STR( ?source_source ), 'http://identifiers.org/wikipathways/WP' ) )
			FILTER ( ?source_target_type != wp:DataNode || STRSTARTS( STR( ?source_target ), 'http://identifiers.org/wikipathways/WP' ) )
			BIND ( true AS ?source_directed )
		}
		OPTIONAL {
			?target wp:source ?target_source .
			?target wp:target ?target_target .
			?target_source a ?target_source_type .
			?target_target a ?target_target_type .
			FILTER ( ?target_source_type != wp:DataNode || STRSTARTS( STR( ?target_source ), 'http://identifiers.org/wikipathways/WP' ) )
			FILTER ( ?target_target_type != wp:DataNode || STRSTARTS( STR( ?target_target ), 'http://identifiers.org/wikipathways/WP' ) )
			BIND ( true AS ?target_directed )
		}
	}
        BIND ( IF ( ?part_directed, wp:DirectedInteraction, ?part_type_tmp ) AS ?part_type )
	BIND ( IF ( ?source_directed, wp:DirectedInteraction, ?source_type_tmp ) AS ?source_type )
	BIND ( IF ( ?target_directed, wp:DirectedInteraction, ?target_type_tmp ) AS ?target_type )
}
" .