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12_02_patentGetEntities.ttl
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168 lines (155 loc) · 6.68 KB
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@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix schembl: <http://rdf.ebi.ac.uk/terms/surechembl#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix void: <http://rdfs.org/ns/void#> .
<#patent> a api:API ;
rdfs:label "Patent"@en ;
api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
api:contentNegotiation api:parameterBased ;
api:variable <#input> ;
api:variable schembl:SCCO_000028 ;
api:variable schembl:SCCO_000038 ;
api:variable _:type ;
api:variable _:title ;
api:variable _:abstract ;
api:variable _:description ;
api:variable _:claims ;
api:variable _:image ;
api:variable _:cwu ;
api:description "An API configuration to return information about patents" ;
api:endpoint [
a api:ListEndpoint ;
api:name "Patent Entities: List" ;
api:description "Retrieves a list of entities that are mentioned in the user specified patent.";
api:uriTemplate "/patent/entities/pages?uri={uri}" ;
api:itemTemplate "{uri}" ;
api:variable <http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000010> ;
api:variable <http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000035> ;
api:variable <http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000036> ;
api:exampleRequestPath "/patent/entities/pages?uri=http%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fsurechembl%2Fpatent%2FEP-1339685-A2";
api:selector <#patentEntitiesViewer> ;
api:viewer <#patentEntitiesViewer> ;
api:defaultViewer <#patentEntitiesViewer> ] .
<#input> api:name "uri" ;
api:label "uri";
api:value "A patent URI. e.g.: http://rdf.ebi.ac.uk/resource/surechembl/patent/EP-1339685-A2" ;
rdfs:range rdfs:Resource .
schembl:SCCO_000028 api:name "score" ;
api:label "score" ;
api:filterVariable "?assoc" ;
api:value "Only return entities mentioned in the patent whose relevance score is equal to this number. An integer between 0 and 3." ;
a rdf:Property .
schembl:SCCO_000038 api:name "frequency" ;
api:label "frequency" ;
api:filterVariable "?assoc" ;
api:value "Only return entites mentioned in the patent with frequency equal to this number. A positive integer." ;
a rdf:Property .
_:type api:name "entity_type" ;
api:label "entity_type" ;
api:filterVariable "?entity_type" ;
api:value "Only return entities of the specified type (and are mentioned in the patent). One of: 'molecule', 'target', 'disease'." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
_:title api:name "title" ;
api:label "title" ;
api:filterVariable "?title_occ" ;
api:value "If set to 'true' the method returns only entities mentioned in the title of the patent." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
_:abstract api:name "abstract" ;
api:label "abstract" ;
api:filterVariable "?abstract_occ" ;
api:value "If set to 'true' the method returns only entities mentioned in the abstract of the patent." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
_:description api:name "description" ;
api:label "description" ;
api:filterVariable "?desc_occ" ;
api:value "If set to 'true' the method returns only entities mentioned in the description section of the patent." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
_:claims api:name "claims" ;
api:label "claims" ;
api:filterVariable "?claims_occ" ;
api:value "If set to 'true' the method returns only entities mentioned in the claims section of the patent." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
_:image api:name "image" ;
api:label "image" ;
api:filterVariable "?image_occ" ;
api:value "If set to 'true' the method returns only entities in an image in the patent." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
_:cwu api:name "cwu" ;
api:label "cwu" ;
api:filterVariable "?cwu_occ" ;
api:value "If set to 'true' the method returns only entities mentioned in a CWU of the patent." ;
rdfs:subPropertyOf api:graphFilter ;
a rdf:Property .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000010> api:name "molecule" .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000035> api:name "target" .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000036> api:name "disease" .
<#patentEntitiesViewer> a api:Viewer ;
api:name "patentEntitiesViewer" ;
api:template
"
?patent_uri dct:title ?title ;
ops:datePublished ?date ;
void:inDataset <http://www.ebi.ac.uk/surechembl> .
?item a ?entity_type ;
ops:occursInPatent ?patent_uri ;
skos:prefLabel ?entity_name ;
ops:smiles ?entity_smiles ;
ops:relevanceScore ?rel_score ;
ops:frequency ?freq ;
ops:occursInPatentTitle ?title_occ;
ops:occursInPatentAbstract ?abstract_occ ;
ops:occursInPatentDescription ?desc_occ ;
ops:occursInPatentClaims ?claims_occ ;
ops:occursInPatentImage ?image_occ ;
ops:occursInPatentCWU ?cwu_occ ;
void:inDataset <http://www.ebi.ac.uk/surechembl> .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000010> skos:prefLabel 'Molecule' ;
void:inDataset <http://www.ebi.ac.uk/surechembl> .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000035> skos:prefLabel 'Target' ;
void:inDataset <http://www.ebi.ac.uk/surechembl> .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000036> skos:prefLabel 'Disease' ;
void:inDataset <http://www.ebi.ac.uk/surechembl> .
" ;
api:where
"
GRAPH <http://www.ebi.ac.uk/surechembl> {
?patent_uri a schembl:SCCO_000002 ;
schembl:SCCO_000007 ?date .
OPTIONAL {
?patent_uri schembl:SCCO_000005 ?title_res .
?title_res schembl:SCCO_000030 ?title ;
schembl:SCCO_000031 'EN' .
}
OPTIONAL {
?assoc schembl:SCCO_000020 ?patent_uri ;
schembl:SCCO_000021 ?item ;
schembl:SCCO_000028 ?rel_score ;
schembl:SCCO_000038 ?freq .
?item a ?entity_type .
OPTIONAL { ?assoc schembl:SCCO_000022 ?desc_occ_tmp }
OPTIONAL { ?assoc schembl:SCCO_000023 ?title_occ_tmp }
OPTIONAL { ?assoc schembl:SCCO_000024 ?claims_occ_tmp }
OPTIONAL { ?assoc schembl:SCCO_000025 ?abstract_occ_tmp }
OPTIONAL { ?assoc schembl:SCCO_000026 ?image_occ_tmp }
OPTIONAL { ?assoc schembl:SCCO_000027 ?cwu_occ_tmp }
OPTIONAL { ?item schembl:SCCO_000037 ?entity_name }
OPTIONAL { ?item schembl:SCCO_000017 ?entity_smiles }
}
BIND ( IF( ?desc_occ_tmp = true, true, false ) AS ?desc_occ )
BIND ( IF( ?title_occ_tmp = true, true, false ) AS ?title_occ )
BIND ( IF( ?claims_occ_tmp = true, true, false ) AS ?claims_occ )
BIND ( IF( ?abstract_occ_tmp = true, true, false ) AS ?abstract_occ )
BIND ( IF( ?image_occ_tmp = true, true, false ) AS ?image_occ )
BIND ( IF( ?cwu_occ_tmp = true, true, false ) AS ?cwu_occ )
}
".