12_09_patentByDisease.ttl

@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix schembl: <http://rdf.ebi.ac.uk/terms/surechembl#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix void: <http://rdfs.org/ns/void#> .

<#patent> a api:API ;
	rdfs:label "Patent"@en ;
	api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
	api:contentNegotiation api:parameterBased ;
	api:variable <#input> ;
	api:variable schembl:SCCO_000028 ;
	api:variable schembl:SCCO_000038 ;
	api:variable _:class ;
	api:variable _:title ;
	api:variable _:abstract ;
	api:variable _:description ;
	api:variable _:claims ;
	api:variable _:image ;
	api:variable _:cwu ;
	api:description "An API configuration to return information about patents" ;
	api:endpoint [
		a api:ListEndpoint ;
		api:name "Patents for Disease: List" ;
		api:description "A list of patents which mention the Disease specified";
		api:uriTemplate "/patent/byDisease?uri={uri}" ;
		api:exampleRequestPath "/patent/byDisease?uri=http%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fsurechembl%2Fdisease%2FHMGCS1" ;
		api:selector <#patentByDiseaseViewer> ;
                api:viewer <#patentByDiseaseViewer> ;
		api:defaultViewer <#patentByDiseaseViewer> .
	] .

<#input> api:name "uri" ;
        api:label "uri";
        api:value "A disease URI. e.g.: http://rdf.ebi.ac.uk/resource/surechembl/disease/HMGCS1" ;
        rdfs:range rdfs:Resource .

schembl:SCCO_000028 api:name "score" ;
	api:label "score" ;
	api:filterVariable "?assoc" ;
	api:value "Only return patents in which the disease occurs with a relevance score equal to this number. An integer between 0 and 3." ;
	a rdf:Property .

schembl:SCCO_000038 api:name "frequency" ;
        api:label "frequency" ;
        api:filterVariable "?assoc" ;
        api:value "Only return patents in which the number of times the disease is mentioned is equal to this number. A positive integer." ;
	a rdf:Property .

_:class api:name "classification" ;
        api:label "classification" ;
        api:filterVariable "?class_code" ;
        api:value "Only return patents that have been classified with this classification code. The CPC, IPC and IPCR classification schemes are currently supported." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:title api:name "title" ;
        api:label "title" ;
        api:filterVariable "?title_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in the title of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:abstract api:name "abstract" ;
	api:label "abstract" ;
	api:filterVariable "?abstract_occ" ;
	api:value "If set to 'true' the method returns only entities mentioned in the abstract of the patent." ;
	rdfs:subPropertyOf api:graphFilter ;
	a rdf:Property .

_:description api:name "description" ;
        api:label "description" ;
        api:filterVariable "?desc_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in the description section of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:claims api:name "claims" ;
        api:label "claims" ;
        api:filterVariable "?claims_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in the claims section of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

<#patentByDiseaseViewer> a api:Viewer ;
	api:name "patentByDiseaseViewer" ;
	api:template
"
?item dct:title ?title ;
	ops:datePublished ?date ;
	ops:mentions ?schembl_disease_uri ;
        ops:relevanceScore ?rel_score ;
        ops:frequency ?freq ;
        ops:occursInPatentTitle ?title_occ;
        ops:occursInPatentAbstract ?abstract_occ ;
        ops:occursInPatentDescription ?desc_occ ;
        ops:occursInPatentClaims ?claims_occ ;
        ops:occursInPatentImage ?image_occ ;
        ops:occursInPatentCWU ?cwu_occ ;
	void:inDataset <http://www.ebi.ac.uk/surechembl> .
?schembl_disease_uri a schembl:SCCO_000035 ;
	skos:prefLabel ?disease_name ;
	void:inDataset <http://www.ebi.ac.uk/surechembl> .
schembl:SCCO_000035 skos:prefLabel 'Disease' ;
        void:inDataset <http://www.ebi.ac.uk/surechembl> .
";
	api:where
"
GRAPH <http://www.ebi.ac.uk/surechembl> {
	?item a schembl:SCCO_000002 ;
		schembl:SCCO_000007 ?date .
	?assoc schembl:SCCO_000020 ?item ;
		schembl:SCCO_000021 ?schembl_disease_uri ;
                schembl:SCCO_000028 ?rel_score ;
                schembl:SCCO_000038 ?freq .
        ?schembl_disease_uri a schembl:SCCO_000036 .
	OPTIONAL {
		?item schembl:SCCO_000005 ?title_res .
		?title_res schembl:SCCO_000030 ?title ;
			schembl:SCCO_000031 'EN' .
	}
	OPTIONAL {
		?item schembl:SCCO_000009 ?class_res .
		?class_res schembl:SCCO_000033 ?class_code ;
			schembl:SCCO_000034 ?class_sys .
	}
	OPTIONAL { ?assoc schembl:SCCO_000022 ?desc_occ_tmp }
	OPTIONAL { ?assoc schembl:SCCO_000023 ?title_occ_tmp }
	OPTIONAL { ?assoc schembl:SCCO_000024 ?claims_occ_tmp }
	OPTIONAL { ?assoc schembl:SCCO_000025 ?abstract_occ_tmp }
	OPTIONAL { ?assoc schembl:SCCO_000026 ?image_occ_tmp }
	OPTIONAL { ?assoc schembl:SCCO_000027 ?cwu_occ_tmp }
	OPTIONAL { ?schembl_disease_uri schembl:SCCO_000037 ?disease_name }
        BIND ( IF( ?desc_occ_tmp = true, true, false ) AS ?desc_occ )
        BIND ( IF( ?title_occ_tmp = true, true, false ) AS ?title_occ )
        BIND ( IF( ?claims_occ_tmp = true, true, false ) AS ?claims_occ )
        BIND ( IF( ?abstract_occ_tmp = true, true, false ) AS ?abstract_occ )
        BIND ( IF( ?image_occ_tmp = true, true, false ) AS ?image_occ )
        BIND ( IF( ?cwu_occ_tmp = true, true, false ) AS ?cwu_occ )
}
" .