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Fix control methods (#109) #431

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Fix control methods (#109)

Fix control methods (#109) #431

Run time

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Job Run time
test / List components to test
28s
test / Test (lisi, metrics, src/metrics/lisi/config.vsh.yaml, src/metrics/lisi/, python_script, metrics/...
8m 34s
test / Test (emd, metrics, src/metrics/emd/config.vsh.yaml, src/metrics/emd/, python_script, metrics/emd)
7m 34s
test / Test (bras, metrics, src/metrics/bras/config.vsh.yaml, src/metrics/bras/, python_script, metrics/...
3m 52s
test / Test (average_batch_r2, metrics, src/metrics/average_batch_r2/config.vsh.yaml, src/metrics/averag...
2m 32s
test / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
2m 4s
test / Test (n_inconsistent_peaks, metrics, src/metrics/n_inconsistent_peaks/config.vsh.yaml, src/metric...
5m 20s
test / Test (flowsom_mapping_similarity, metrics, src/metrics/flowsom_mapping_similarity/config.vsh.yaml...
7m 47s
test / Test (cytovi, methods, src/methods/cytovi/config.vsh.yaml, src/methods/cytovi/, python_script, me...
12m 30s
test / Test (cytonorm_all_controls_to_mid, methods, src/methods/cytonorm_all_controls_to_mid/config.vsh....
7m 35s
test / Test (cytonorm_all_controls_to_goal, methods, src/methods/cytonorm_all_controls_to_goal/config.vs...
8m 47s
test / Test (limma_remove_batch_effect, methods, src/methods/limma_remove_batch_effect/config.vsh.yaml, ...
5m 44s
test / Test (cycombine_no_controls_to_goal, methods, src/methods/cycombine_no_controls_to_goal/config.vs...
3m 35s
test / Test (batchadjust_all_controls, methods, src/methods/batchadjust_all_controls/config.vsh.yaml, sr...
5m 48s
test / Test (rpca_to_goal, methods, src/methods/rpca_to_goal/config.vsh.yaml, src/methods/rpca_to_goal/,...
8m 8s
test / Test (harmonypy, methods, src/methods/harmonypy/config.vsh.yaml, src/methods/harmonypy/, python_s...
6m 30s
test / Test (gaussnorm, methods, src/methods/gaussnorm/config.vsh.yaml, src/methods/gaussnorm/, r_script...
3m 1s
test / Test (cycombine_one_control_to_mid, methods, src/methods/cycombine_one_control_to_mid/config.vsh....
7m 13s
test / Test (cytonorm_no_controls_to_mid, methods, src/methods/cytonorm_no_controls_to_mid/config.vsh.ya...
8m 6s
test / Test (cycombine_one_control_to_goal, methods, src/methods/cycombine_one_control_to_goal/config.vs...
8m 11s
test / Test (cycombine_all_controls_to_mid, methods, src/methods/cycombine_all_controls_to_mid/config.vs...
7m 3s
test / Test (batchadjust_one_control, methods, src/methods/batchadjust_one_control/config.vsh.yaml, src/...
8m 16s
test / Test (cycombine_all_controls_to_goal, methods, src/methods/cycombine_all_controls_to_goal/config....
8m 12s
test / Test (perfect_integration, control_methods, src/control_methods/perfect_integration/config.vsh.ya...
5m 32s
test / Test (no_integration, control_methods, src/control_methods/no_integration/config.vsh.yaml, src/co...
5m 20s
test / Test (cytonorm_no_controls_to_goal, methods, src/methods/cytonorm_no_controls_to_goal/config.vsh....
9m 23s
test / Test (shuffle_integration_by_batch, control_methods, src/control_methods/shuffle_integration_by_b...
5m 59s
test / Test (cytonorm_one_control_to_goal, methods, src/methods/cytonorm_one_control_to_goal/config.vsh....
9m 27s
test / Test (rpca_to_mid, methods, src/methods/rpca_to_mid/config.vsh.yaml, src/methods/rpca_to_mid/, r_...
7m 6s
test / Test (cycombine_no_controls_to_mid, methods, src/methods/cycombine_no_controls_to_mid/config.vsh....
6m 36s
test / Test (shuffle_integration, control_methods, src/control_methods/shuffle_integration/config.vsh.ya...
2m 48s
test / Test (shuffle_integration_by_cell_type, control_methods, src/control_methods/shuffle_integration_...
3m 7s
test / Test (combat, methods, src/methods/combat/config.vsh.yaml, src/methods/combat/, python_script, me...
5m 39s
test / Test (cytonorm_one_control_to_mid, methods, src/methods/cytonorm_one_control_to_mid/config.vsh.ya...
7m 59s
3h 35m 46s