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undo changes to run script
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scripts/run_benchmark/run_full_seqeracloud.sh

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@@ -17,12 +17,11 @@ cat > /tmp/params.yaml << HERE
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input_states: s3://openproblems-data/resources/task_cyto_batch_integration/datasets/**/state.yaml
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rename_keys: 'input_censored_split1:output_censored_split1;input_censored_split2:output_censored_split2;input_unintegrated:output_unintegrated'
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output_state: "state.yaml"
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settings: '{"metrics_include": ["emd", "ratio_inconsistent_peaks", "n_inconsistent_peaks"], "methods_include": ["harmonypy", "cycombine_no_controls_to_goal", "cycombine_all_controls_to_goal", "cytonorm_no_controls_to_goal", "cytonorm_all_controls_to_goal"]}'
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publish_dir: "$publish_dir"
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HERE
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tw launch https://github.com/openproblems-bio/task_cyto_batch_integration.git \
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--revision build/update_n_inconsistent_peak \
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--revision build/main \
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--pull-latest \
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--main-script target/nextflow/workflows/run_benchmark/main.nf \
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--workspace 53907369739130 \

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