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Speed up polygon caclculation in comseg (#70) #165

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Job	Run time
build / Build target branch	34s
build / Build (pciseq, methods_transcript_assignment, executable, docker\|native, src/methods_transcript_a...	15m 50s
build / Build (comseg, methods_transcript_assignment, executable, docker\|native, src/methods_transcript_a...	6m 4s
build / Build (clustermap, methods_transcript_assignment, executable, docker\|native, src/methods_transcri...	6m 56s
build / Build (alpha_shapes, methods_calculate_cell_volume, executable, docker\|native, src/methods_calcul...	13m 3s
build / Build (basic_transcript_assignment, methods_transcript_assignment, executable, docker\|native, src...	6m 9s
build / Build (baysor, methods_transcript_assignment, executable, docker\|native, src/methods_transcript_a...	11m 33s
build / Build (permute_celltype_annotations, control_methods, executable, docker, src/control_methods/per...	3m 11s
build / Build (ssam, methods_cell_type_annotation, executable, docker\|native, src/methods_cell_type_annot...	11m 38s
build / Build (resolvi_correction, methods_expression_correction, executable, docker\|native, src/methods_...	17m 56s
build / Build (gene_efficiency_correction, methods_expression_correction, executable, docker\|native, src/...	14m 40s
build / Build (basic_qc_filter, methods_qc_filter, executable, docker\|native, src/methods_qc_filter/basic...	8m 35s
build / Build (similarity, metrics, executable, docker\|native, src/metrics/similarity/config.vsh.yaml, ta...	13m 39s
build / Build (identity, control_methods, executable, docker, src/control_methods/identity/config.vsh.yam...	5m 21s
build / Build (moscot, methods_cell_type_annotation, executable, docker\|native, src/methods_cell_type_ann...	4m 52s
build / Build (tacco, methods_cell_type_annotation, executable, docker\|native, src/methods_cell_type_anno...	6m 48s
build / Build (process_dataset, data_processors, executable, docker\|native, src/data_processors/process_d...	6m 10s
build / Build (fetch_task_execution, core, executable, docker, src/core/fetch_task_execution/config.vsh.y...	4m 29s
build / Build (cellpose, methods_segmentation, executable, docker\|native, src/methods_segmentation/cellpo...	15m 39s
build / Build (custom_segmentation, methods_segmentation, executable, docker\|native, src/methods_segmenta...	6m 22s
build / Build (watershed, methods_segmentation, executable, docker\|native, src/methods_segmentation/water...	15m 52s
build / Build (binning, methods_segmentation, executable, docker\|native, src/methods_segmentation/binning...	12m 12s
build / Build (ganier_human_skin_sc, datasets/loaders, executable, docker\|native, src/datasets/loaders/ga...	13m 3s
build / Build (crop_region, datasets/processors, executable, docker, src/datasets/processors/crop_region/...	6m 35s
build / Build (stardist, methods_segmentation, executable, docker\|native, src/methods_segmentation/stardi...	4m 52s
build / Build (lee_human_colon_cancer_sc, datasets/loaders, executable, docker\|native, src/datasets/loade...	17m 25s
build / Build (normalize_by_volume, methods_normalization, executable, docker\|native, src/methods_normali...	2m 4s
build / Build (lu_human_liver_cancer_sc, datasets/loaders, executable, docker\|native, src/datasets/loader...	12m 28s
build / Build (travaglini_human_lung_sc, datasets/loaders, executable, docker\|native, src/datasets/loader...	16m 56s
build / Build (tenx_xenium, datasets/loaders, executable, docker\|native, src/datasets/loaders/tenx_xenium...	7m 19s
build / Build (bruker_cosmx, datasets/loaders, executable, docker\|native, src/datasets/loaders/bruker_cos...	6m 16s
build / Build (vizgen_merscope, datasets/loaders, executable, docker\|native, src/datasets/loaders/vizgen_...	2m 36s
build / Build (basic_count_aggregation, methods_count_aggregation, executable, docker\|native, src/methods...	16m 15s
build / Build (normalize_by_counts, methods_normalization, executable, docker\|native, src/methods_normali...	14m 25s
build / Build (bruker_cosmx_nsclc, datasets/loaders, executable, docker\|native, src/datasets/loaders/bruk...	5m 45s
build / Build (wu_human_breast_cancer_sc, datasets/loaders, executable, docker\|native, src/datasets/loade...	16m 11s
build / Build (allen_brain_cell_atlas, datasets/loaders, executable, docker\|native, src/datasets/loaders/...	5m 18s
build / Build (spanorm, methods_normalization, executable, docker\|native, src/methods_normalization/spano...	11m 16s
build / Build (zuani_human_nsclc_sc, datasets/loaders, executable, docker\|native, src/datasets/loaders/zu...	24m 18s
	6h 30m 35s

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Speed up polygon caclculation in comseg (#70) #165

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Speed up polygon caclculation in comseg (#70) #165

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