Test

Cosmx loader (#81) #339

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Job	Run time
build / List components to test	32s
build / Test (spanorm, methods_normalization, src/methods_normalization/spanorm/config.vsh.yaml, src/meth...	7m 15s
build / Test (normalize_by_volume, methods_normalization, src/methods_normalization/normalize_by_volume/c...	2m 43s
build / Test (ssam, methods_cell_type_annotation, src/methods_cell_type_annotation/ssam/config.vsh.yaml, ...	4m 59s
build / Test (crop_region, datasets/processors, src/datasets/processors/crop_region/config.vsh.yaml, src/...	8m 11s
build / Test (lee_human_colon_cancer_sc, datasets/loaders, src/datasets/loaders/lee_human_colon_cancer_sc...	8m 31s
build / Test (similarity, metrics, src/metrics/similarity/config.vsh.yaml, src/metrics/similarity/, pytho...	8m 53s
build / Test (travaglini_human_lung_sc, datasets/loaders, src/datasets/loaders/travaglini_human_lung_sc/c...	3m 34s
build / Test (wu_human_breast_cancer_sc, datasets/loaders, src/datasets/loaders/wu_human_breast_cancer_sc...	7m 37s
build / Test (vizgen_merscope, datasets/loaders, src/datasets/loaders/vizgen_merscope/config.vsh.yaml, sr...	2m 59s
build / Test (bruker_cosmx, datasets/loaders, src/datasets/loaders/bruker_cosmx/config.vsh.yaml, src/data...	7m 53s
build / Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...	5m 48s
build / Test (tacco, methods_cell_type_annotation, src/methods_cell_type_annotation/tacco/config.vsh.yaml...	5m 25s
build / Test (moscot, methods_cell_type_annotation, src/methods_cell_type_annotation/moscot/config.vsh.ya...	3m 58s
build / Test (normalize_by_counts, methods_normalization, src/methods_normalization/normalize_by_counts/c...	6m 8s
build / Test (ganier_human_skin_sc, datasets/loaders, src/datasets/loaders/ganier_human_skin_sc/config.vs...	8m 21s
build / Test (permute_celltype_annotations, control_methods, src/control_methods/permute_celltype_annotat...	6m 46s
build / Test (lu_human_liver_cancer_sc, datasets/loaders, src/datasets/loaders/lu_human_liver_cancer_sc/c...	9m 36s
build / Test (bruker_cosmx_nsclc, datasets/loaders, src/datasets/loaders/bruker_cosmx_nsclc/config.vsh.ya...	8m 11s
build / Test (zuani_human_nsclc_sc, datasets/loaders, src/datasets/loaders/zuani_human_nsclc_sc/config.vs...	7m 53s
build / Test (gene_efficiency_correction, methods_expression_correction, src/methods_expression_correctio...	5m 2s
build / Test (alpha_shapes, methods_calculate_cell_volume, src/methods_calculate_cell_volume/alpha_shapes...	8m 44s
build / Test (pciseq, methods_transcript_assignment, src/methods_transcript_assignment/pciseq/config.vsh....	7m 49s
build / Test (resolvi_correction, methods_expression_correction, src/methods_expression_correction/resolv...	8m 18s
build / Test (proseg, methods_transcript_assignment, src/methods_transcript_assignment/proseg/config.vsh....	14m 13s
build / Test (allen_brain_cell_atlas, datasets/loaders, src/datasets/loaders/allen_brain_cell_atlas/confi...	5m 48s
build / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...	3m 15s
build / Test (identity, control_methods, src/control_methods/identity/config.vsh.yaml, src/control_method...	7m 44s
build / Test (basic_transcript_assignment, methods_transcript_assignment, src/methods_transcript_assignme...	8m 13s
build / Test (no_correction, methods_expression_correction, src/methods_expression_correction/no_correcti...	4m 10s
build / Test (clustermap, methods_transcript_assignment, src/methods_transcript_assignment/clustermap/con...	10m 52s
build / Test (fetch_task_execution, core, src/core/fetch_task_execution/config.vsh.yaml, src/core/fetch_t...	4m 56s
build / Test (baysor, methods_transcript_assignment, src/methods_transcript_assignment/baysor/config.vsh....	10m 48s
build / Test (basic_qc_filter, methods_qc_filter, src/methods_qc_filter/basic_qc_filter/config.vsh.yaml, ...	7m 4s
build / Test (cellpose, methods_segmentation, src/methods_segmentation/cellpose/config.vsh.yaml, src/meth...	8m 54s
build / Test (comseg, methods_transcript_assignment, src/methods_transcript_assignment/comseg/config.vsh....	8m 57s
build / Test (watershed, methods_segmentation, src/methods_segmentation/watershed/config.vsh.yaml, src/me...	13m 11s
build / Test (binning, methods_segmentation, src/methods_segmentation/binning/config.vsh.yaml, src/method...	9m 30s
build / Test (basic_count_aggregation, methods_count_aggregation, src/methods_count_aggregation/basic_cou...	8m 17s
build / Test (custom_segmentation, methods_segmentation, src/methods_segmentation/custom_segmentation/con...	6m 15s
build / Test (stardist, methods_segmentation, src/methods_segmentation/stardist/config.vsh.yaml, src/meth...	7m 18s
	4h 54m 31s

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Cosmx loader (#81) #339

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Cosmx loader (#81) #339

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