Adjust anndata version for gene eff correction and qc filter (#113)

LouisK92 · web-flow · commit 0e9e3ad988e0 · 2025-12-10T13:54:18.000+01:00
diff --git a/src/methods_expression_correction/gene_efficiency_correction/config.vsh.yaml b/src/methods_expression_correction/gene_efficiency_correction/config.vsh.yaml
@@ -29,6 +29,9 @@ engines:
     image: openproblems/base_python:1
     __merge__: 
       - /src/base/setup_txsim_partial.yaml
+    setup:
+        - type: python
+          pypi: ["anndata>=0.12.0"]
   - type: native
 
 runners:
diff --git a/src/methods_qc_filter/basic_qc_filter/config.vsh.yaml b/src/methods_qc_filter/basic_qc_filter/config.vsh.yaml
@@ -31,6 +31,9 @@ engines:
     image: openproblems/base_python:1
     __merge__: 
       - /src/base/setup_txsim_partial.yaml
+    setup:
+        - type: python
+          pypi: ["anndata>=0.12.0"]
   - type: native
 
 runners:
