Add feature_name to adata.var in multiple sc datasets (#90)

Author: LouisK92

src/datasets/loaders/ganier_human_skin_sc/script.py

@@ -86,6 +86,7 @@
 
 # Var
 adata.var["gene_symbol"] = adata.var_names
+adata.var["feature_name"] = adata.var_names
 # TODO: can we also get ensembl ids? (adata.var["feature_id"]) 
 
 # Uns

src/datasets/loaders/lee_human_colon_cancer_sc/script.py

@@ -123,6 +123,7 @@
 
 # Var
 adata.var["gene_symbol"] = adata.var_names
+adata.var["feature_name"] = adata.var_names
 # TODO: can we also get ensembl ids? (adata.var["feature_id"]) 
 
 # Uns

src/datasets/loaders/lu_human_liver_cancer_sc/script.py

@@ -121,6 +121,7 @@
 
 # Var
 adata.var["gene_symbol"] = adata.var_names
+adata.var["feature_name"] = adata.var_names
 # TODO: can we also get ensembl ids? (adata.var["feature_id"]) 
 
 # Uns

src/datasets/loaders/travaglini_human_lung_sc/script.py

@@ -99,6 +99,7 @@
 adata.var_names = adata.var_names.astype(str)
 adata.var_names_make_unique()
 adata.var.index.name = None
+adata.var["feature_name"] = adata.var_names.astype(str)
 
 # Uns
 for key in ["dataset_id", "dataset_name", "dataset_url", "dataset_reference", "dataset_summary", "dataset_description", "dataset_organism"]:

src/datasets/loaders/wu_human_breast_cancer_sc/script.py

@@ -123,6 +123,7 @@
 
 # Var
 adata.var["gene_symbol"] = adata.var_names
+adata.var["feature_name"] = adata.var_names
 # TODO: can we also get ensembl ids? (adata.var["feature_id"]) 
 
 # Uns

src/datasets/loaders/zuani_human_nsclc_sc/script.py

@@ -107,9 +107,10 @@
 
 # Add gene symbol column
 adata.var["gene_symbol"] = adata.var_names
+adata.var["feature_name"] = adata.var_names.astype(str)
 
 # Subset var columns
-var_cols = ["gene_symbol"]
+var_cols = ["gene_symbol", "feature_name"]
 adata.var = adata.var[var_cols]
 
 # Add layers