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Add comseg to workflow (#57)
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src/workflows/run_benchmark/config.vsh.yaml

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@@ -64,6 +64,7 @@ dependencies:
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- name: methods_transcript_assignment/baysor
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- name: methods_transcript_assignment/clustermap
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- name: methods_transcript_assignment/pciseq
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- name: methods_transcript_assignment/comseg
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- name: methods_count_aggregation/basic_count_aggregation
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- name: methods_qc_filter/basic_qc_filter
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- name: methods_calculate_cell_volume/alpha_shapes

src/workflows/run_benchmark/main.nf

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@@ -108,7 +108,8 @@ workflow run_wf {
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),
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baysor,
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clustermap,
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pciseq
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pciseq,
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comseg
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]
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segm_ass_ch = segm_ch
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| runEach(

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