Adjust baysor and moscot dependencies

Author: LouisK92

src/methods_cell_type_annotation/moscot/config.vsh.yaml

@@ -50,7 +50,7 @@ engines:
     image: openproblems/base_python:1
     setup:
       - type: python
-        pypi: [numpy, anndata, scanpy, moscot, flax, diffrax]
+        pypi: [numpy, "jax[cuda13]", anndata, scanpy, moscot, flax, diffrax]
   - type: native
 
 runners:

src/methods_transcript_assignment/baysor/config.vsh.yaml

@@ -73,6 +73,7 @@ engines:
   #      with the correct platform separately with the following command:
   #      docker run -it --rm --platform linux/x86_64 python:3.11.13-bookworm /bin/bash
   #      ... and then the commands to build the next layers.
+  #      (commands can be retrieved from `viash run src/methods_transcript_assignment/baysor/config.vsh.yaml -- ---dockerfile`)
   - type: docker
     image: python:3.11.13-bookworm
     setup:
@@ -84,6 +85,7 @@ engines:
       - type: python
         packages:
            - spatialdata
+           - anndata<0.12.0 #TODO: Remove this line when https://github.com/gustaveroussy/sopa/issues/305 is resolved
            - sopa[baysor]
       - type: docker
         run:
@@ -111,4 +113,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [ veryhightime, midcpu, highmem ]
+      label: [ veryhightime, highcpu, highmem ]