Change default ct annotation method to tacco (#126)

LouisK92 · web-flow · commit f995cb8eaed2 · 2026-02-20T12:26:51.000+01:00
diff --git a/scripts/run_benchmark/run_full_local.sh b/scripts/run_benchmark/run_full_local.sh
@@ -28,7 +28,7 @@ default_methods:
   - basic_qc_filter
   - alpha_shapes
   - normalize_by_volume
-  - ssam
+  - tacco
   - no_correction
 segmentation_methods:
   - custom_segmentation
diff --git a/scripts/run_benchmark/run_full_seqeracloud.sh b/scripts/run_benchmark/run_full_seqeracloud.sh
@@ -20,7 +20,7 @@ default_methods:
   - basic_qc_filter
   - alpha_shapes
   - normalize_by_volume
-  - ssam
+  - tacco
   - no_correction
 segmentation_methods:
   - custom_segmentation
diff --git a/scripts/run_benchmark/run_test_local.sh b/scripts/run_benchmark/run_test_local.sh
@@ -23,7 +23,7 @@ default_methods:
   - basic_qc_filter
   - alpha_shapes
   - normalize_by_volume
-  - ssam
+  - tacco
   - no_correction
 segmentation_methods:
   - custom_segmentation
diff --git a/scripts/run_benchmark/run_test_seqeracloud.sh b/scripts/run_benchmark/run_test_seqeracloud.sh
@@ -19,7 +19,7 @@ default_methods:
   - basic_qc_filter
   - alpha_shapes
   - normalize_by_volume
-  - ssam
+  - tacco
   - no_correction
 segmentation_methods:
   - custom_segmentation
