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Refactor geneformer (#16) #36

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Refactor geneformer (#16)

Refactor geneformer (#16) #36

Run time

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Job Run time
build / Build target branch
26s
build / Build (majority_vote, control_methods, executable, docker, src/control_methods/majority_vote/conf...
1m 2s
build / Build (true_labels, control_methods, executable, docker, src/control_methods/true_labels/config.v...
56s
build / Build (random_labels, control_methods, executable, docker, src/control_methods/random_labels/conf...
1m 7s
build / Build (accuracy, metrics, executable, docker, src/metrics/accuracy/config.vsh.yaml, target/execut...
1m 49s
build / Build (f1, metrics, executable, docker, src/metrics/f1/config.vsh.yaml, target/executable/metrics...
1m 5s
build / Build (process_dataset, data_processors, executable, docker, src/data_processors/process_dataset/...
59s
build / Build (scanvi, methods, executable, docker, src/methods/scanvi/config.vsh.yaml, target/executable...
9m 26s
build / Build (scgpt_zero_shot, methods, executable, docker, src/methods/scgpt_zero_shot/config.vsh.yaml,...
13m 14s
build / Build (logistic_regression, methods, executable, docker, src/methods/logistic_regression/config.v...
1m 9s
build / Build (mlp, methods, executable, docker, src/methods/mlp/config.vsh.yaml, target/executable/metho...
1m 1s
build / Build (uce, methods, executable, docker, src/methods/uce/config.vsh.yaml, target/executable/metho...
4m 42s
build / Build (scgpt_fine_tuned, methods, executable, docker, src/methods/scgpt_fine_tuned/config.vsh.yam...
11m 9s
build / Build (scprint, methods, executable, docker, src/methods/scprint/config.vsh.yaml, target/executab...
19m 26s
build / Build (singler, methods, executable, docker, src/methods/singler/config.vsh.yaml, target/executab...
1m 26s
build / Build (xgboost, methods, executable, docker, src/methods/xgboost/config.vsh.yaml, target/executab...
2m 28s
build / Build (naive_bayes, methods, executable, docker, src/methods/naive_bayes/config.vsh.yaml, target/...
1m 40s
build / Build (scimilarity_knn, methods, executable, docker, src/methods/scimilarity_knn/config.vsh.yaml,...
4m 44s
build / Build (scimilarity, methods, executable, docker, src/methods/scimilarity/config.vsh.yaml, target/...
5m 27s
build / Build (scanvi_scarches, methods, executable, docker, src/methods/scanvi_scarches/config.vsh.yaml,...
10m 25s
build / Build (seurat_transferdata, methods, executable, docker, src/methods/seurat_transferdata/config.v...
1m 28s
build / Build (knn, methods, executable, docker, src/methods/knn/config.vsh.yaml, target/executable/metho...
1m 6s
build / Build (geneformer, methods, executable, docker, src/methods/geneformer/config.vsh.yaml, target/ex...
4m 57s
1h 41m 12s