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refactor scgpt methods #80

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refactor scgpt methods

refactor scgpt methods #80

Triggered via push January 20, 2025 23:20
@rcannoodrcannood
pushed 1e7cafe
main
Status Success
Total duration 12m 25s
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test.yaml

on: push
test  /  List components to test
24s
test / List components to test
Matrix: test / Test
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test / List components to test
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test / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
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test / Test (accuracy, metrics, src/metrics/accuracy/config.vsh.yaml, src/metrics/accuracy/, python_scri...
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test / Test (random_labels, control_methods, src/control_methods/random_labels/config.vsh.yaml, src/cont...
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test / Test (mlp, methods, src/methods/mlp/config.vsh.yaml, src/methods/mlp/, python_script, methods/mlp)
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test / Test (naive_bayes, methods, src/methods/naive_bayes/config.vsh.yaml, src/methods/naive_bayes/, py...
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test / Test (logistic_regression, methods, src/methods/logistic_regression/config.vsh.yaml, src/methods/...
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test / Test (majority_vote, control_methods, src/control_methods/majority_vote/config.vsh.yaml, src/cont...
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test / Test (true_labels, control_methods, src/control_methods/true_labels/config.vsh.yaml, src/control_...
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test / Test (knn, methods, src/methods/knn/config.vsh.yaml, src/methods/knn/, python_script, methods/knn)
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test / Test (f1, metrics, src/metrics/f1/config.vsh.yaml, src/metrics/f1/, python_script, metrics/f1)
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test / Test (singler, methods, src/methods/singler/config.vsh.yaml, src/methods/singler/, r_script, meth...
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test / Test (seurat_transferdata, methods, src/methods/seurat_transferdata/config.vsh.yaml, src/methods/...
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test / Test (xgboost, methods, src/methods/xgboost/config.vsh.yaml, src/methods/xgboost/, python_script,...
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test / Test (uce, methods, src/methods/uce/config.vsh.yaml, src/methods/uce/, python_script, methods/uce)
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test / Test (scimilarity_knn, methods, src/methods/scimilarity_knn/config.vsh.yaml, src/methods/scimilar...
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test / Test (scgpt_finetuned, methods, src/methods/scgpt_finetuned/config.vsh.yaml, src/methods/scgpt_fi...
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test / Test (scgpt_zeroshot, methods, src/methods/scgpt_zeroshot/config.vsh.yaml, src/methods/scgpt_zero...
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test / Test (scanvi, methods, src/methods/scanvi/config.vsh.yaml, src/methods/scanvi/, python_script, me...
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test / Test (scanvi_scarches, methods, src/methods/scanvi_scarches/config.vsh.yaml, src/methods/scanvi_s...
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test / Test (geneformer, methods, src/methods/geneformer/config.vsh.yaml, src/methods/geneformer/, pytho...
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test / Test (scprint, methods, src/methods/scprint/config.vsh.yaml, src/methods/scprint/, python_script,...
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