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Adjust features filter in scPRINT
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src/methods/scprint/script.py

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@@ -53,7 +53,7 @@
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print("\n>>> Preprocessing train data...", flush=True)
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preprocessor = Preprocessor(
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# Lower this threshold for test datasets
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min_valid_genes_id=1000 if input_train.n_vars < 2000 else 10000,
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min_valid_genes_id=min(0.9 * adata.n_vars, 10000), # 90% of features up to 10,000
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# Turn off cell filtering to return results for all cells
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filter_cell_by_counts=False,
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min_nnz_genes=False,

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