changing default parameters

Author: jkobject

src/methods/scprint/config.vsh.yaml

@@ -64,14 +64,14 @@ arguments:
   - name: --max_len
     type: integer
     description: The maximum length of the gene sequence.
-    default: 4000
+    default: 2000
   - name: --infer_matches
     type: string
     description:
       The method to use to infer the matches between the predicted and
       true labels.
     choices: ["direct", "linear_sum_assignment"]
-    default: "linear_sum_assignment"
+    default: "direct"
 
 resources:
   - type: python_script
@@ -96,7 +96,7 @@ engines:
 
 runners:
   - type: executable
-    #docker_run_args: --gpus all
+    # docker_run_args: --gpus all
   - type: nextflow
     directives:
       label: [hightime, highmem, midcpu, gpu, highsharedmem]

src/methods/scprint/script.py

@@ -19,7 +19,7 @@
     "output": "output.h5ad",
     "model_name": "v2-medium",
     "model": None,
-    "infer_matches": "linear_sum_assignment",
+    "infer_matches": "direct",
 }
 meta = {"name": "scprint"}
 ## VIASH END