refactor metadata

Author: rcannood

_viash.yaml

@@ -32,7 +32,6 @@ references:
         year={2021}
       }
 
-
 authors:
   - name: Alejandro Granados
     roles: [ author ]

src/api/comp_dataset_processor.yaml src/api/comp_process_datasets.yamlsrc/api/comp_dataset_processor.yaml renamed to src/api/comp_process_datasets.yaml

@@ -1,7 +1,7 @@
 info:
-  type: process_datasets
+  type: process_dataset
   type_info:
-    label: Process dataset
+    label: Process Dataset
     summary: A predict modality dataset processor.
     description: |
       A component for processing a Common Dataset into a task-specific dataset.

src/api/file_common_dataset_mod1.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/common/openproblems_neurips2021/bmmc_cite/dataset_mod1.h5ad"
+label: "Raw dataset RNA"
+summary: "The RNA modality of the raw dataset."
 info:
-  label: "Raw dataset RNA"
-  summary: "The RNA modality of the raw dataset."
   slots:
     layers:
       - type: integer
@@ -85,4 +85,4 @@ info:
       - type: double
         name: gene_activity
         description: ATAC gene activity
-        required: false
+        required: false

src/api/file_common_dataset_mod2.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/common/openproblems_neurips2021/bmmc_cite/dataset_mod2.h5ad"
+label: "Raw dataset mod2"
+summary: "The second modality of the raw dataset. Must be an ADT or an ATAC dataset"
 info:
-  label: "Raw dataset mod2"
-  summary: "The second modality of the raw dataset. Must be an ADT or an ATAC dataset"
   slots:
     layers:
       - type: integer
@@ -85,4 +85,4 @@ info:
       - type: double
         name: gene_activity
         description: ATAC gene activity
-        required: false
+        required: false

src/api/file_prediction.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/predict_modality/openproblems_neurips2021/bmmc_cite/swap/prediction.h5ad"
+label: "Prediction"
+summary: "A prediction of the mod2 expression values of the test cells"
 info:
-  label: "Prediction"
-  summary: "A prediction of the mod2 expression values of the test cells"
   slots:
     layers:
       - type: double
@@ -17,4 +17,4 @@ info:
       - type: string
         name: method_id
         description: "A unique identifier for the method"
-        required: true
+        required: true

src/api/file_pretrained_model.yaml

@@ -1,4 +1,3 @@
 type: file
-info:
-  label: "Pretrained model"
-  summary: "A pretrained model for predicting the expression of one modality from another."
+label: "Pretrained model"
+summary: "A pretrained model for predicting the expression of one modality from another."

src/api/file_score.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/predict_modality/openproblems_neurips2021/bmmc_cite/swap/score.h5ad"
+label: "Score"
+summary: "Metric score file"
 info:
-  label: "Score"
-  summary: "Metric score file"
   slots:
     uns:
       - type: string

src/api/file_test_mod1.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/predict_modality/openproblems_neurips2021/bmmc_cite/swap/test_mod1.h5ad"
+label: "Test mod1"
+summary: "The mod1 expression values of the test cells."
 info:
-  label: "Test mod1"
-  summary: "The mod1 expression values of the test cells."
   slots:
     layers:
       - type: integer

src/api/file_test_mod2.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/predict_modality/openproblems_neurips2021/bmmc_cite/swap/test_mod2.h5ad"
+label: "Test mod2"
+summary: "The mod2 expression values of the test cells."
 info:
-  label: "Test mod2"
-  summary: "The mod2 expression values of the test cells."
   slots:
     layers:
       - type: integer
@@ -78,4 +78,4 @@ info:
       - type: double
         name: gene_activity
         description: ATAC gene activity
-        required: false
+        required: false

src/api/file_train_mod1.yaml

@@ -1,8 +1,8 @@
 type: file
 example: "resources_test/predict_modality/openproblems_neurips2021/bmmc_cite/swap/train_mod1.h5ad"
+label: "Train mod1"
+summary: "The mod1 expression values of the train cells."
 info:
-  label: "Train mod1"
-  summary: "The mod1 expression values of the train cells."
   slots:
     layers:
       - type: integer
@@ -62,4 +62,4 @@ info:
       - type: double
         name: gene_activity
         description: ATAC gene activity
-        required: false
+        required: false