type the deepzoom generator

Signed-off-by: Sam Maxwell <[email protected]>

Author: sammaxwellxyz

openslide/deepzoom.py

@@ -46,7 +46,13 @@ class DeepZoomGenerator:
         openslide.PROPERTY_NAME_BOUNDS_HEIGHT,
     )
 
-    def __init__(self, osr, tile_size=254, overlap=1, limit_bounds=False):
+    def __init__(
+        self,
+        osr: openslide.AbstractSlide,
+        tile_size: int = 254,
+        overlap: int = 1,
+        limit_bounds: bool = False,
+    ):
         """Create a DeepZoomGenerator wrapping an OpenSlide object.
 
         osr:          a slide object.
@@ -101,7 +107,7 @@ def __init__(self, osr, tile_size=254, overlap=1, limit_bounds=False):
         self._z_dimensions = tuple(reversed(z_dimensions))
 
         # Tile
-        def tiles(z_lim):
+        def tiles(z_lim: int) -> int:
             return int(math.ceil(z_lim / self._z_t_downsample))
 
         self._t_dimensions = tuple(
@@ -112,7 +118,8 @@ def tiles(z_lim):
         self._dz_levels = len(self._z_dimensions)
 
         # Total downsamples for each Deep Zoom level
-        l0_z_downsamples = tuple(
+        # mypy infers this as a tuple[Any, ...] due to the ** operator
+        l0_z_downsamples: tuple[int, ...] = tuple(
             2 ** (self._dz_levels - dz_level - 1) for dz_level in range(self._dz_levels)
         )
 
@@ -134,7 +141,7 @@ def tiles(z_lim):
             openslide.PROPERTY_NAME_BACKGROUND_COLOR, 'ffffff'
         )
 
-    def __repr__(self):
+    def __repr__(self) -> str:
         return '{}({!r}, tile_size={!r}, overlap={!r}, limit_bounds={!r})'.format(
             self.__class__.__name__,
             self._osr,
@@ -144,26 +151,26 @@ def __repr__(self):
         )
 
     @property
-    def level_count(self):
+    def level_count(self) -> int:
         """The number of Deep Zoom levels in the image."""
         return self._dz_levels
 
     @property
-    def level_tiles(self):
+    def level_tiles(self) -> tuple[tuple[int, int], ...]:
         """A list of (tiles_x, tiles_y) tuples for each Deep Zoom level."""
         return self._t_dimensions
 
     @property
-    def level_dimensions(self):
+    def level_dimensions(self) -> tuple[tuple[int, ...], ...]:
         """A list of (pixels_x, pixels_y) tuples for each Deep Zoom level."""
         return self._z_dimensions
 
     @property
-    def tile_count(self):
+    def tile_count(self) -> int:
         """The total number of Deep Zoom tiles in the image."""
         return sum(t_cols * t_rows for t_cols, t_rows in self._t_dimensions)
 
-    def get_tile(self, level, address):
+    def get_tile(self, level: int, address: tuple[int, int]) -> Image.Image:
         """Return an RGB PIL.Image for a tile.
 
         level:     the Deep Zoom level.
@@ -191,7 +198,9 @@ def get_tile(self, level, address):
 
         return tile
 
-    def _get_tile_info(self, dz_level, t_location):
+    def _get_tile_info(
+        self, dz_level: int, t_location: tuple[int, int]
+    ) -> tuple[tuple[tuple[int, int], int, tuple[int, int]], tuple[int, int]]:
         # Check parameters
         if dz_level < 0 or dz_level >= self._dz_levels:
             raise ValueError("Invalid level")
@@ -210,42 +219,62 @@ def _get_tile_info(self, dz_level, t_location):
         )
 
         # Get final size of the tile
-        z_size = tuple(
-            min(self._z_t_downsample, z_lim - self._z_t_downsample * t) + z_tl + z_br
-            for t, z_lim, z_tl, z_br in zip(
-                t_location, self._z_dimensions[dz_level], z_overlap_tl, z_overlap_br
+        z_size = (
+            min(
+                self._z_t_downsample,
+                self._z_dimensions[dz_level][0] - self._z_t_downsample * t_location[0],
             )
+            + z_overlap_tl[0]
+            + z_overlap_br[0],
+            min(
+                self._z_t_downsample,
+                self._z_dimensions[dz_level][1] - self._z_t_downsample * t_location[1],
+            )
+            + z_overlap_tl[1]
+            + z_overlap_br[1],
         )
 
         # Obtain the region coordinates
-        z_location = [self._z_from_t(t) for t in t_location]
-        l_location = [
-            self._l_from_z(dz_level, z - z_tl)
-            for z, z_tl in zip(z_location, z_overlap_tl)
-        ]
+        z_location = (self._z_from_t(t_location[0]), self._z_from_t(t_location[1]))
+        l_location = (
+            self._l_from_z(dz_level, z_location[0] - z_overlap_tl[0]),
+            self._l_from_z(dz_level, z_location[1] - z_overlap_tl[1]),
+        )
         # Round location down and size up, and add offset of active area
-        l0_location = tuple(
-            int(self._l0_from_l(slide_level, l) + l0_off)
-            for l, l0_off in zip(l_location, self._l0_offset)
+        l0_location = (
+            int(self._l0_from_l(slide_level, l_location[0]) + self._l0_offset[0]),
+            int(self._l0_from_l(slide_level, l_location[1]) + self._l0_offset[1]),
         )
-        l_size = tuple(
-            int(min(math.ceil(self._l_from_z(dz_level, dz)), l_lim - math.ceil(l)))
-            for l, dz, l_lim in zip(l_location, z_size, self._l_dimensions[slide_level])
+        l_size = (
+            int(
+                min(
+                    math.ceil(self._l_from_z(dz_level, z_size[0])),
+                    self._l_dimensions[slide_level][0] - math.ceil(l_location[0]),
+                )
+            ),
+            int(
+                min(
+                    math.ceil(self._l_from_z(dz_level, z_size[1])),
+                    self._l_dimensions[slide_level][1] - math.ceil(l_location[1]),
+                )
+            ),
         )
 
         # Return read_region() parameters plus tile size for final scaling
         return ((l0_location, slide_level, l_size), z_size)
 
-    def _l0_from_l(self, slide_level, l):
+    def _l0_from_l(self, slide_level: int, l: float) -> float:
         return self._l0_l_downsamples[slide_level] * l
 
-    def _l_from_z(self, dz_level, z):
+    def _l_from_z(self, dz_level: int, z: int) -> float:
         return self._l_z_downsamples[dz_level] * z
 
-    def _z_from_t(self, t):
+    def _z_from_t(self, t: int) -> int:
         return self._z_t_downsample * t
 
-    def get_tile_coordinates(self, level, address):
+    def get_tile_coordinates(
+        self, level: int, address: tuple[int, int]
+    ) -> tuple[tuple[int, int], int, tuple[int, int]]:
         """Return the OpenSlide.read_region() arguments for the specified tile.
 
         Most users should call get_tile() rather than calling
@@ -256,15 +285,17 @@ def get_tile_coordinates(self, level, address):
                    tuple."""
         return self._get_tile_info(level, address)[0]
 
-    def get_tile_dimensions(self, level, address):
+    def get_tile_dimensions(
+        self, level: int, address: tuple[int, int]
+    ) -> tuple[int, int]:
         """Return a (pixels_x, pixels_y) tuple for the specified tile.
 
         level:     the Deep Zoom level.
         address:   the address of the tile within the level as a (col, row)
                    tuple."""
         return self._get_tile_info(level, address)[1]
 
-    def get_dzi(self, format):
+    def get_dzi(self, format: str) -> str:
         """Return a string containing the XML metadata for the .dzi file.
 
         format:    the format of the individual tiles ('png' or 'jpeg')"""