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[Platform]: Updated target prioritisation documentation links (#703)
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apps/platform/src/components/AssociationsToolkit/static_datasets/prioritisationColumns.ts

Lines changed: 31 additions & 16 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,8 @@ const maxClinicalTrialPhase: Column = {
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aggregation: TargetPrioritisationAggregation.PRECEDENCE,
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sectionId: "knownDrugs",
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description: "Target is in clinical trials for any indication",
9-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#target-in-clinic",
9+
docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#target-in-clinic",
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};
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const isInMembrane: Column = {
@@ -15,7 +16,8 @@ const isInMembrane: Column = {
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aggregation: TargetPrioritisationAggregation.TRACTABILITY,
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sectionId: "subcellularLocation",
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description: "Target is annotated to be located in the cell membrane",
18-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#membrane-protein",
19+
docsLink:
20+
"https://platform-docs.opentargets.org/web-interface/target-prioritisation#membrane-protein",
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};
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const isSecreted: Column = {
@@ -24,7 +26,8 @@ const isSecreted: Column = {
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aggregation: TargetPrioritisationAggregation.TRACTABILITY,
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sectionId: "subcellularLocation",
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description: "Target is annotated to be secreted",
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docsLink: "https://platform-docs.opentargets.org/target-prioritisation#secreted-protein",
29+
docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#secreted-protein",
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};
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const hasLigand: Column = {
@@ -33,7 +36,8 @@ const hasLigand: Column = {
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aggregation: TargetPrioritisationAggregation.TRACTABILITY,
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sectionId: "tractability",
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description: "Target binds a specific ligand",
36-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#ligand-binder",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#ligand-binder",
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};
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const hasSmallMoleculeBinder: Column = {
@@ -42,7 +46,8 @@ const hasSmallMoleculeBinder: Column = {
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aggregation: TargetPrioritisationAggregation.TRACTABILITY,
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sectionId: "tractability",
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description: "Target binds a small molecule",
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docsLink: "https://platform-docs.opentargets.org/target-prioritisation#small-molecule-binder",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#small-molecule-binder",
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};
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const hasPocket: Column = {
@@ -51,7 +56,8 @@ const hasPocket: Column = {
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aggregation: TargetPrioritisationAggregation.TRACTABILITY,
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sectionId: "tractability",
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description: "Target has predicted pockets",
54-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#predicted-pockets",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#predicted-pockets",
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};
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const mouseOrthologMaxIdentityPercentage: Column = {
@@ -60,7 +66,8 @@ const mouseOrthologMaxIdentityPercentage: Column = {
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aggregation: TargetPrioritisationAggregation.DOABILITY,
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sectionId: "compGenomics",
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description: "Mouse ortholog maximum identity percentage",
63-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#mouse-ortholog-identity",
69+
docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#mouse-ortholog-identity",
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sectionProps: { viewMode: "mouseOrthologMaxIdentityPercentage" },
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};
6673

@@ -70,7 +77,8 @@ const hasHighQualityChemicalProbes: Column = {
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aggregation: TargetPrioritisationAggregation.DOABILITY,
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sectionId: "chemicalProbes",
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description: "Availability of high quality chemical probes for the target",
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docsLink: "https://platform-docs.opentargets.org/target-prioritisation#chemical-probes",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#chemical-probes",
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};
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const mouseKOScore: Column = {
@@ -79,7 +87,8 @@ const mouseKOScore: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "mousePhenotypes",
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description: "Availability of mouse knockout models for the target",
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docsLink: "https://platform-docs.opentargets.org/target-prioritisation#mouse-models",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#mouse-models",
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};
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const geneticConstraint: Column = {
@@ -88,7 +97,8 @@ const geneticConstraint: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "geneticConstraint",
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description: "Relative genetic constraint in natural populations derived from GnomAD",
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docsLink: "https://platform-docs.opentargets.org/target-prioritisation#genetic-constraint",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#genetic-constraint",
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};
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const geneEssentiality: Column = {
@@ -97,7 +107,8 @@ const geneEssentiality: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "depMapEssentiality",
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description: "Gene is defined as core essential by the DepMap portal",
100-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#gene-essentiality",
110+
docsLink:
111+
"https://platform-docs.opentargets.org/web-interface/target-prioritisation#gene-essentiality",
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};
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const hasSafetyEvent: Column = {
@@ -106,7 +117,8 @@ const hasSafetyEvent: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "safety",
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description: "Target associated with a curated adverse event",
109-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#known-adverse-events",
120+
docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#known-adverse-events",
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};
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const isCancerDriverGene: Column = {
@@ -115,7 +127,8 @@ const isCancerDriverGene: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "cancerHallmarks",
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description: "Target is classified as an Oncogene and/or Tumor Suppressor Gene",
118-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#cancer-driver-gene",
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docsLink:
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"https://platform-docs.opentargets.org/web-interface/target-prioritisation#cancer-driver-gene",
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};
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const paralogMaxIdentityPercentage: Column = {
@@ -124,7 +137,7 @@ const paralogMaxIdentityPercentage: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "compGenomics",
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description: "Paralog maximum identity percentage",
127-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#paralogues",
140+
docsLink: "https://platform-docs.opentargets.org/web-interface/target-prioritisation#paralogues",
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sectionProps: { viewMode: "paralogMaxIdentityPercentage" },
129142
};
130143

@@ -134,7 +147,8 @@ const tissueSpecificity: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "expressions",
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description: "HPA category types of elevated expression across tissues for the target",
137-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#tissue-specificity",
150+
docsLink:
151+
"https://platform-docs.opentargets.org/web-interface/target-prioritisation#tissue-specificity",
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};
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140154
const tissueDistribution: Column = {
@@ -143,7 +157,8 @@ const tissueDistribution: Column = {
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aggregation: TargetPrioritisationAggregation.SAFETY,
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sectionId: "expressions",
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description: "HPA category types of detectable expression across tissues for the target",
146-
docsLink: "https://platform-docs.opentargets.org/target-prioritisation#tissue-distribution",
160+
docsLink:
161+
"https://platform-docs.opentargets.org/web-interface/target-prioritisation#tissue-distribution",
147162
};
148163

149164
const cols: Column[] = [

packages/sections/src/target/ComparativeGenomics/ComparativeGenomicsPlot.tsx

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -13,9 +13,9 @@ const content = {
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};
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const contentURL = {
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mouseOrthologMaxIdentityPercentage:
16-
"https://platform-docs.opentargets.org/target-prioritisation#mouse-ortholog-identity",
16+
"https://platform-docs.opentargets.org/web-interface/target-prioritisation#mouse-ortholog-identity",
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paralogMaxIdentityPercentage:
18-
"https://platform-docs.opentargets.org/target-prioritisation#paralogues",
18+
"https://platform-docs.opentargets.org/web-interface/target-prioritisation#paralogues",
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};
2020

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function getTooltipContent(homolog) {

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