chore: move reactome from output to intermediate (#4297)

d0choa · DSuveges · commit d0268fc6c794 · 2026-02-17T09:53:19.000Z
diff --git a/src/main/resources/reference.conf b/src/main/resources/reference.conf
@@ -46,7 +46,7 @@ steps: {
     output: {
       reactome: {
         format: ${common.output_format}
-        path: ${common.output_path}"/output/reactome"
+        path: ${common.output_path}"/intermediate/reactome"
       }
     }
   }
@@ -317,7 +317,7 @@ steps: {
       }
       reactome_etl: {
         format: "parquet"
-        path: ${common.path}"/output/reactome/part*"
+        path: ${common.path}"/intermediate/reactome/part*"
       }
       reactome_pathways: {
         format: "csv"

Original file line number	Diff line number	Diff line change
`@@ -46,7 +46,7 @@ steps: {`
`46`	`46`	`output: {`
`47`	`47`	`reactome: {`
`48`	`48`	`format: ${common.output_format}`
`49`		`- path: ${common.output_path}"/output/reactome"`
	`49`	`+ path: ${common.output_path}"/intermediate/reactome"`
`50`	`50`	`}`
`51`	`51`	`}`
`52`	`52`	`}`
`@@ -317,7 +317,7 @@ steps: {`
`317`	`317`	`}`
`318`	`318`	`reactome_etl: {`
`319`	`319`	`format: "parquet"`
`320`		`- path: ${common.path}"/output/reactome/part*"`
	`320`	`+ path: ${common.path}"/intermediate/reactome/part*"`
`321`	`321`	`}`
`322`	`322`	`reactome_pathways: {`
`323`	`323`	`format: "csv"`