[TRANSFORMATIONS] Add Qwen 2.5 VL M-RoPE handling to SDPAToPA (#34365)

- Details:
The original Qwen 2.5 VL model has 3D position_ids input facilitating
the 3D M-RoPE. In order to handle this in the PA scenario, where data
for the input is provided as a flat tensor, the 3D coordinate semantics
also had to be preserved. That is why instead of setting the input shape
for position_ids as [-1], for the given case we set it as [3, -1]. This
allows for the correct model output result.

- Tickets:
[CVS-167316](https://jira.devtools.intel.com/browse/CVS-167316)

Signed-off-by: Andrii Staikov <andrii.staikov.intel.com>

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Co-authored-by: Denis Orlov <denis.orlov@intel.com>

Author: CuriousPanCake