Merge branch 'development' into experimental

Author: pgleeson

.github/workflows/docker-image.yml

@@ -31,3 +31,5 @@ jobs:
         ls -alth
         ls -alth output
         ls -alth output/*
+
+        more output/*/report.json 

Dockerfile

@@ -59,7 +59,7 @@ RUN sudo pip install neuron==8.2.6  --break-system-packages
 
 RUN git clone https://github.com/openworm/c302.git && \
   cd c302 && \
-  git checkout ow-0.9.6 && \
+  git checkout ow-0.9.8 && \
   sudo pip install .  --break-system-packages
 
 # Note: pyNeuroML installed with the above library
@@ -71,7 +71,13 @@ RUN git clone https://github.com/openworm/c302.git && \
 
 RUN git clone https://github.com/openworm/sibernetic.git && \
   cd sibernetic && \
-  git checkout ow-0.9.6  # fixed to a specific branch
+  git checkout ow-0.9.8a  # fixed to a specific branch
+
+
+################################################################################
+########     Install extra Python dependencies
+
+RUN sudo pip install ruff  --break-system-packages
 
 
 ################################################################################
@@ -117,7 +123,7 @@ RUN cd sibernetic && \
 COPY ./master_openworm.py $HOME/master_openworm.py
 RUN sudo chown $USER:$USER $HOME/master_openworm.py
 
-RUN printf '\n\nalias cd..="cd .."\nalias h=history\nalias ll="ls -alt"\n' >> ~/.bashrc
+RUN printf '\n\nalias cd..="cd .."\nalias h=history\nalias ll="ls -alth"\n' >> ~/.bashrc
 
 RUN pip list
 

VERSION

@@ -1 +1 @@
-0.9.6
+0.9.8