Add initial docker file

Author: pgleeson

Dockerfile

@@ -0,0 +1,27 @@
+FROM python:3.12-slim
+
+WORKDIR /app
+
+RUN apt-get update && apt-get install -y \
+    build-essential \
+    curl \
+    software-properties-common \
+    git  \
+    libxrender1 procps libgl1-mesa-glx xvfb \
+    && rm -rf /var/lib/apt/lists/*
+
+
+COPY requirements.txt ./
+RUN pip3 install  -r   requirements.txt
+
+
+COPY *.py *.stl *.obj ./
+COPY Sibernetic/* ./Sibernetic/
+COPY NeuroML2/* ./NeuroML2/
+COPY NeuroML2/cells/* ./NeuroML2/cells/
+
+EXPOSE 8501
+
+HEALTHCHECK CMD curl --fail http://localhost:8501/_stcore/health
+
+ENTRYPOINT ["streamlit", "run", "app.py", "--server.port=8501", "--server.address=0.0.0.0"]

generate.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+set -ex
+
+no_cache_flag=""
+if [[ ($# -eq 1) && ($1 == '-r') ]]; then
+    no_cache_flag="--no-cache"
+fi
+
+# Set the platform flag if we're on ARM
+arch=$(uname -m)
+if [[ "$arch" == "arm64" || "$arch" == "aarch64" ]]; then
+    platform_flag="--platform linux/amd64"
+else
+    platform_flag=""
+fi
+
+
+docker build $platform_flag -t worm3dviewer $no_cache_flag .

requirements.txt

@@ -1,4 +1,7 @@
-# Worm3DViewer Requirements
+altair
+pandas
+streamlit
+vtk
 pyvista
 stpyvista
 

runLocal.sh

@@ -0,0 +1 @@
+docker run  -p 8501:8501 -i -t worm3dviewer /bin/bash