Update non_omv.yml #394
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| name: Non-OMV-tests | ||
| on: | ||
| push: | ||
| branches: [ master, development, experimental, ow* ] | ||
| pull_request: | ||
| branches: [ master, development, experimental, ow* ] | ||
| jobs: | ||
| build: | ||
| runs-on: ${{ matrix.runs-on }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| runs-on: [ubuntu-latest, macos-13, macos-latest ] | ||
| python-version: [ 3.9, "3.10", "3.11", "3.12" ] | ||
| exclude: | ||
| - runs-on: macos-latest | ||
| python-version: "3.8" | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install HDF5 for pytables on macos-latest | ||
| if: ${{ matrix.runs-on == 'macos-latest' }} | ||
| run: | | ||
| brew install hdf5 | ||
| - name: Install OMV | ||
| run: | | ||
| pip install git+https://github.com/OpenSourceBrain/osb-model-validation | ||
| - name: Install c302 | ||
| run: | | ||
| pip install . | ||
| pip install WormNeuroAtlas | ||
| pip list | ||
| - name: Test OpenWormReader with owmeta | ||
| if: ${{ matrix.python-version != '3.11' } && { matrix.python-version != '3.12' }} | ||
|
Check failure on line 46 in .github/workflows/non_omv.yml
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||
| run: | | ||
| pip install owmeta>=0.12.3 | ||
| owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json' | ||
| python -m c302.OpenWormReader | ||
| - name: Test WormNeuroAtlasReader | ||
| run: | | ||
| python -m c302.WormNeuroAtlasReader | ||
| - name: Run some examples | ||
| run: | | ||
| cd c302 | ||
| mkdir examples | ||
| python c302_IClamp.py A | ||
| omv list -V | ||
| omv install NEURON # Need to install NEURON | ||
| which nrnivmodl | ||
| - name: Run test script | ||
| run: | | ||
| export NEURON_HOME=$pythonLocation | ||
| pip install ruff | ||
| ./test.sh | ||
| - name: Final version info | ||
| run: | | ||
| pip list | ||
| env | ||
| ls -lath | ||
