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is incredibly welcoming and supportive. We've received data and help from <i>C. elegans</i> biologists including
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<ahref="http://www.salk.edu/faculty/chalasani.html" target="_blank">Dr. Sreekanth Chalasani</a> at the Salk Institute,
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<ahref="https://www.linkedin.com/in/michael-francis-666220122" target="_blank">Dr. Michael Francis</a> at UMass Medical School,
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<ahref="http://www2.mrc-lmb.cam.ac.uk/groups/wschafer" target="_blank">Dr. William Schafer</a> at University of Cambridge
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and <ahref="http://leiferlab.princeton.edu/" target="_blank">Dr. Andrew Leifer</a> at Princeton University. We've been
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inspired and received help on worm simulations from the lab of <ahref="http://www.comp.leeds.ac.uk/netta/" target="_blank">Dr. Netta Cohen</a> at Leeds
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inspired and received help on worm simulations from the lab of <ahref="https://eps.leeds.ac.uk/computing/staff/301/professor-netta-cohen" target="_blank">Dr. Netta Cohen</a> at Leeds
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University and her students. The original source for many of the 3D images of the worm's body
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is the <ahref="http://caltech.wormbase.org/virtualworm/" target="_blank">Virtual Worm project</a> at <ahref="http://www.wormbase.org/" target="_blank">WormBase</a>,
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specifically <ahref="http://www.linkedin.com/pub/christian-grove/a/396/562" target="_blank">Dr. Christian Grove</a> at CalTech.
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is the <ahref="http://caltech.wormbase.org/virtualworm/" target="_blank">Virtual Worm project</a> at <ahref="https://parasite.wormbase.org/Caenorhabditis_elegans_prjna13758/Info/Index" target="_blank">WormBase</a>,
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specifically <ahref="https://www.linkedin.com/in/chris-grove-phd-cspo-562396a/" target="_blank">Dr. Christian Grove</a> at CalTech.
3D through Open Source Brain; OSB Explorer allows scientists to expose the property
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of the neurons and navigate their connections by simply clicking on them.
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<br/><br/>
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<ahref="http://opensourcebrain.org/projects/celegans?explorer=https%3A%2F%2Fraw.github.com%2Fopenworm%2FCElegansNeuroML%2Fmaster%2FCElegans%2FgeneratedNeuroML2%2FMuscleCellConnections.net.nml" target="_blank"><i>C. elegans</i> connectome on Open Source Brain</a>
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<ahref="https://v1.opensourcebrain.org/projects/blender-to-neuroml" target="_blank"><i>C. elegans</i> connectome on Open Source Brain</a>
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</p>
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<h3>Sibernetic</h3>
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<br/>
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<tdclass="lead">Here you can view and download thousands of unpublished electron micrographs and associated data</td>
<tdclass="lead">Provides access to results from RNAi interference studies in <i>C. elegans</i>, including images, movies, phenotypes, and graphical maps</td>
<tdclass="lead">Our aim was to test all <i>C. elegans</i> genes for their role in the first two rounds of mitotic cell division. To this end, we combined genome-wide RNAi screening with time-lapse video microscopy of the early embryo</td>
<tdclass="lead">Worm Interactome version 8 assembles high-quality yeast two-hybrid protein protein interactions in <i>C. elegans</i></td>
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<tdclass="lead">The Biological General Repository for Interaction Datasets (BioGRID) is an online interaction repository with data compiled through comprehensive curation efforts</td>
<tdclass="lead">The Kohara lab has been constructing an expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans through EST analysis and systematic whole mount in situ hybridization. NEXTDB is the database to integrate all information from our expression pattern project</td>
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<tdclass="lead">PubMed comprises more than 23 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites</td>
<tdclass="lead">Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide</td>
<tdclass="lead">The 100 Mb genome is organized in six chromosomes and annotation represents more than 20,000 genes. The gene, transcript, and protein annotation is provided by WormBase and NCBI provides ab initio model predictions and calculates alignments to provide the <i>C. elegans</i> UniGene (Cel_UniG) and transcript (Cel_EST) maps</td>
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<tdclass="lead">The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information</td>
<tdclass="lead">The Gene Ontology project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. The project provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data from GO Consortium members, as well as tools to access and process this data</td>
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<tdclass="lead">We maintain the world’s most comprehensive range of freely available and up-to-date molecular databases. Developed in collaboration with our colleagues worldwide, our services let you share data, perform complex queries and analyse the results in different ways</td>
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@@ -110,7 +110,7 @@ <h1>Academic Support</h1>
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<p><b><ahref="http://www.iis.nsk.su/en/" target="_blank">A.P. Ershov Institute of Informatic Systems</a></b> SB RAS via Andrey Palyanov / Sergey Khayrulin (Lab. of Complex Systems Simulations)</p>
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<br/><p>The following people contributed to OpenWorm as part of the <b><ahref="https://developers.google.com/open-source/gsoc/" target="_blank">Google Summer of Code</a></b> program, sponsored by <b><ahref="https://www.incf.org/" target="_blank">INCF</a> (International Neuroinformatics Coordinating Facility)</b>: Mark Watts (2014), Johannes Rieke (2014), Travis Jacobs (2015), Siddharth Yadav (2017), Arnab Banerjee (2018), Afonso Pinto (2018), Vinay Varma (2019), Emily Thomas (2019), Jaideep Seth (2019), Ujjwal Singh (2020), and Mayukh Deb (2020).
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<br/><p>The following people contributed to OpenWorm as part of the <b><ahref="https://developers.google.com/open-source/gsoc/" target="_blank">Google Summer of Code</a></b> program, sponsored by <b><ahref="https://www.incf.org/" target="_blank">INCF</a> (International Neuroinformatics Coordinating Facility)</b>: Mark Watts (2014), Johannes Rieke (2014), Travis Jacobs (2015), Siddharth Yadav (2017), Arnab Banerjee (2018), Afonso Pinto (2018), Vinay Varma (2019), Emily Thomas (2019), Jaideep Seth (2019), Ujjwal Singh (2020), Mayukh Deb (2020), Mainak Deb (2021), Karan Lohaan (2022), Jiahang Li (2022), Harikrishna Pillai (2022), Wataru Kawakami (2022), Sushmanth Reddy (2023), Himanshu Chougule (2023), Mehul Arora (2024), Pakhi Banchalia (2024).
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<br><br>
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The following people contributed to OpenWorm as part of the <b><ahref="https://developers.google.com/open-source/gsoc/" target="_blank">Google Season of Docs</a></b> program, sponsored by <b><ahref="https://www.incf.org/" target="_blank">INCF</a> (International Neuroinformatics Coordinating Facility)</b>: Casper daCosta-Luis (2019).</p>
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