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3D through Open Source Brain; OSB Explorer allows scientists to expose the property
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of the neurons and navigate their connections by simply clicking on them.
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<br/><br/>
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<ahref="http://opensourcebrain.org/projects/celegans?explorer=https%3A%2F%2Fraw.github.com%2Fopenworm%2FCElegansNeuroML%2Fmaster%2FCElegans%2FgeneratedNeuroML2%2FMuscleCellConnections.net.nml" target="_blank">C.elegans connectome on Open Source Brain</a>
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<ahref="http://opensourcebrain.org/projects/celegans?explorer=https%3A%2F%2Fraw.github.com%2Fopenworm%2FCElegansNeuroML%2Fmaster%2FCElegans%2FgeneratedNeuroML2%2FMuscleCellConnections.net.nml" target="_blank"><i>C. elegans</i> connectome on Open Source Brain</a>
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</p>
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<h3>Sibernetic</h3>
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<br/>
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Openworm has been developing <ahref="http://openworm.github.io/sibernetic/" target="_blank">Sibernetic</a>, a C++ implementation of the Predictive-corrective
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Incompressible Smooth Particle Hydrodynamics (PCI-SPH) algorithm based on the work of <ahref="https://sph-sjtu-f06.googlecode.com/files/a40-solenthaler.pdf" target="_blank">Solenthaler</a>.
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The algorithm has been extended to model contractile matter and membranes for simulating
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the muscle tissue of the C. elegans. The implementation uses OpenCL to distribute the computation
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the muscle tissue of the <i>C. elegans</i>. The implementation uses OpenCL to distribute the computation
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of the particle system on both CPUs and GPUs in a parallelized way.
This is a list of online resources related to C. elegans which we have found useful in the OpenWorm project.
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This is a list of online resources related to <i>C. elegans</i> which we have found useful in the OpenWorm project.
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If you know of other resources we should include here, please <ahref="contacts.html">get in contact</a>!
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</p>
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<tableclass="table">
@@ -228,7 +228,7 @@ <h1>External Resources</h1>
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</thead>
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<tbody>
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<tdclass="lead"><ahref="https://docs.google.com/a/metacell.us/spreadsheet/ccc?key=0ArNOKkIblIRadE5lVkN4WGMzNUZLdVROUEZVTUlUVGc&usp=drive_web#gid=0" target="_blank">C. Elegans Ion Channels</a></td>
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<tdclass="lead"><ahref="https://docs.google.com/a/metacell.us/spreadsheet/ccc?key=0ArNOKkIblIRadE5lVkN4WGMzNUZLdVROUEZVTUlUVGc&usp=drive_web#gid=0" target="_blank"><i>C. elegans</i> Ion Channels</a></td>
<tdclass="lead">A comprehensive web-based database of genes, gene expression, proteins, and much more specifically for c. elegans and related species</td>
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<tdclass="lead">A comprehensive web-based database of genes, gene expression, proteins, and much more specifically for <i>C. elegans</i> and related species</td>
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</tr>
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<tdclass="lead"><ahref="http://caltech.wormbase.org/virtualworm/" target="_blank">Virtual Worm project at WormBase</a></td>
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<tdclass="lead">3D Blender files for the anatomy of the C. elegans</td>
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<tdclass="lead">3D Blender files for the anatomy of the <i>C. elegans</i></td>
<tdclass="lead">Provides access to results from RNAi interference studies in C. elegans, including images, movies, phenotypes, and graphical maps</td>
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<tdclass="lead">Provides access to results from RNAi interference studies in <i>C. elegans</i>, including images, movies, phenotypes, and graphical maps</td>
<tdclass="lead">Our aim was to test all C. elegans genes for their role in the first two rounds of mitotic cell division. To this end, we combined genome-wide RNAi screening with time-lapse video microscopy of the early embryo</td>
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<tdclass="lead">Our aim was to test all <i>C. elegans</i> genes for their role in the first two rounds of mitotic cell division. To this end, we combined genome-wide RNAi screening with time-lapse video microscopy of the early embryo</td>
<tdclass="lead">Each page in this database is a record of the results of one experiment. For each experiment, a C. elegans genomic DNA fragment has been joined to a reporter gene, either lacZ or gfp and this fusion gene has been used to generate transgenic C. elegans lines</td>
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<tdclass="lead">Each page in this database is a record of the results of one experiment. For each experiment, a <i>C. elegans</i> genomic DNA fragment has been joined to a reporter gene, either lacZ or gfp and this fusion gene has been used to generate transgenic <i>C. elegans</i> lines</td>
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</tr>
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<tdclass="lead"><ahref="http://gfpweb.aecom.yu.edu/index" target="_blank">BC C. elegans Gene Expression Consortium</a></td>
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<tdclass="lead">Expression patterns for C. elegans promoter:GFP fusions</td>
<tdclass="lead">Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide</td>
<tdclass="lead">The 100 Mb genome is organized in six chromosomes and annotation represents more than 20,000 genes. The gene, transcript, and protein annotation is provided by WormBase and NCBI provides ab initio model predictions and calculates alignments to provide the C. elegans UniGene (Cel_UniG) and transcript (Cel_EST) maps</td>
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<tdclass="lead">The 100 Mb genome is organized in six chromosomes and annotation represents more than 20,000 genes. The gene, transcript, and protein annotation is provided by WormBase and NCBI provides ab initio model predictions and calculates alignments to provide the <i>C. elegans</i> UniGene (Cel_UniG) and transcript (Cel_EST) maps</td>
<tdclass="lead">The goal of Ensembl is to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web</td>
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