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added REPLICATE area to head
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war/getting_started.html

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<link rel="apple-touch-icon-precomposed" href="../assets/ico/apple-touch-icon-57-precomposed.png">
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<!-- pull in nav header with jquery;
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REPLICATE THIS IN ALL PAGES -->
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<!-- REPLICATE THIS IN ALL PAGES;
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pull in nav header with jquery -->
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<div class="navbar navbar-inverse navbar-fixed-top" id="head-nav"></div>
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<script src="js/jquery-3.2.1.js"></script>
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<script>

war/index.html

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<link rel="apple-touch-icon-precomposed" sizes="72x72" href="../assets/ico/apple-touch-icon-72-precomposed.png">
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<link rel="apple-touch-icon-precomposed" href="../assets/ico/apple-touch-icon-57-precomposed.png">
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<!-- pull in nav header with jquery;
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REPLICATE THIS IN ALL PAGES -->
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<!-- REPLICATE THIS IN ALL PAGES;
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pull in nav header with jquery -->
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<div class="navbar navbar-inverse navbar-fixed-top" id="head-nav"></div>
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<script src="js/jquery-3.2.1.js"></script>
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<script>
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<br/>
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<br/>
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</p>
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<a class="btn btn-large btn-primary" href="http://optimal-neuron.readthedocs.org/" target="_blank">Documentation</a>
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<a class="btn btn-large btn-primary" href="http://optimal-neuron.readthedocs.org/" \target="_blank">Documentation</a>
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<a class="btn btn-large btn-primary" href="https://github.com/openworm/muscle_model"
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target="_blank">Source code</a>
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</div>

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