Merge pull request #130 from rgerkin/patch-1

Added F1000 Unit Testing paper

Author: gidili

publications.html

@@ -63,6 +63,29 @@ <h1>Publications</h1>
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+			<h2>Unit testing, model validation, and biological simulation</h2>
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+			<p>
+			    August 10 2016, F1000 Research. DOI: 10.12688/f1000research.9315.1
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+			<p class="authors">
+			    Gopal Sarma, Travis Jacobs, Mark Watts, Vahid Ghayoomie, Stephen Larson, and Richard Gerkin
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+			<p>
+			    The growth of the software industry has gone hand in hand with the development of tools and cultural practices 
+			    for ensuring the reliability of complex pieces of software. These tools and practices are now acknowledged 
+			    to be essential to the management of modern software. As computational models and methods have become 
+			    increasingly common in the biological sciences, it is important to examine how these practices can accelerate 
+			    biological software development and improve research quality. In this article, we give a focused case study 
+			    of our experience with the practices of unit testing and test-driven development in OpenWorm, an open-science 
+			    project aimed at modeling Caenorhabditis elegans. We identify and discuss the challenges of incorporating 
+			    test-driven development into a heterogeneous, data-driven project, as well as the role of model validation 
+			    tests, a category of tests unique to software which expresses scientific models.<br/>
+			    <a href="https://f1000research.com/articles/10.12688/f1000research.9315.1/doi" target="_blank">Read more</a>.
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 			<h2>Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue</h2>
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