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We have created a <strong>Docker container</strong> which contains all of the major components of the simulation stack we have built so far. It can be used to run a <strong>preliminary model</strong> of the worm in 3D on your computer.
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We have created a <strong>Docker container</strong> which contains all of the major components of the <ahref="http://docs.openworm.org/en/latest/projects/" target="_blank">simulation stack</a> we have built so far. It can be used to run a <strong>preliminary model</strong> of the worm in 3D on your computer.
<strong>Geppetto</strong> is a web-based platform for visualizing and simulating data and models. It started in the OpenWorm project and is being used for a number of other projects across neuroscience.
The 3D worm body model in OpenWorm is being developed in <strong>Sibernetic</strong>. you can download this application and run the particle hydrodynamics simulations on your own machine.
We packaged <strong>Eclipse distributions</strong> for the different operating systems, ready with all the plugins necessary to start working on Geppetto, our simulation engine.
We have developed a Python library, <strong>owmeta</strong>, which gives easy programmatic access to a wide range of anatomical and physiological data about <i>C. elegans</i>.
Geppetto's <strong>alpha release</strong> is now available, see release notes <ahref="https://github.com/openworm/org.geppetto/releases" target="_blank">here</a>. Here's <ahref="https://github.com/openworm/OpenWorm/wiki/Geppetto---Install-instructions" target="_blank">instructions</a>.
The <strong>c302</strong> framework allows network models of the <i>C. elegans</i> nervous system to be generated at various levels of detail to simulate the activity of the brain of the worm.
Find out how these and other software packages fit together on our <ahref="http://docs.openworm.org/en/latest/projects/" target="_blank">OpenWorm projects page</a>.
We have captured the full 3D morphology of the C. elegans <b>connectome</b> in NeuroML format, and we are currently working to integrate electro-physiology.
We have imported the NeuroML connectome model for C. elegans into a <ahref="http://www.neuroconstruct.org">neuroConstruct</a> project. Here's a <ahref="https://github.com/openworm/OpenWorm/wiki/Running-the-C.-elegans-model-in-neuroConstruct">guide to getting started</a> with it.
We are maintaining an online folder with data spreadsheets and information, including lists of all C. elegans neurons. Anything to add? Give us a <ahref="contacts.html">shout</a>!
We have created a number of <strong>scientific resources</strong> aimed at the <i>C. elegans</i> community to assist research into this fascinating organism.
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