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@AFM-SPM Software for AFM & SPM data analysis

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    26 repositories

    • napari-AFMReader

      Public
      A Napari plugin to read in AFM files via AFMReader.
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Mar 27, 2026Mar 27, 2026

    • napari-TopoStats

      Public
      A napari plugin implementation of topostats
      Python
      •
      GNU General Public License v3.0
      •0•3•26•1•Updated Mar 27, 2026Mar 27, 2026

    • AFMReader

      Public
      A library for loading various atomic force microscopy file formats.
      afmioatomic-force-microscopy
      afmioatomic-force-microscopy
      Python
      •
      GNU General Public License v3.0
      •3•22•14•1•Updated Mar 27, 2026Mar 27, 2026

    • AFMSlicer

      Public
      A Python package for slicing Atomic Force Microscopy images.
      Python
      •
      GNU General Public License v3.0
      •0•0•6•0•Updated Mar 27, 2026Mar 27, 2026

    • TopoStats

      Public
      An AFM image analysis program to batch process data and obtain statistics from images
      pythonafmimage-processing
      pythonafmimage-processingpython3spmhacktoberfestatomic-force-microscopy
      Python
      •
      GNU Lesser General Public License v3.0
      •21•76•135•6•Updated Mar 27, 2026Mar 27, 2026

    • napari-afmslicer

      Public
      Napari plugin for using AFMSlicer
      Python
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Mar 26, 2026Mar 26, 2026

    • PerovStats

      Public
      An image analysis program to process AFM scans of perovskite and perform analysis on them
      Python
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Mar 24, 2026Mar 24, 2026

    • topostats-training

      Public
      TopoStats Training Material
      afmimage-processingenglish
      afmimage-processingenglishlessonpre-alpha
      Other
      •0•0•8•1•Updated Mar 24, 2026Mar 24, 2026

    • afm-software-list

      Public
      Management of our curated AFM software list
      Python
      •
      MIT License
      •2•4•1•0•Updated Nov 4, 2025Nov 4, 2025

    • numpyencoder

      Public
      Custom Python JSON encoder for handling Numpy data types
      Python
      •
      MIT License
      •3•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • pySPM

      Public
      Python library to handle Scanning Probe Microscopy Images. Can read nanoscan .xml data, Bruker AFM images, Nanonis SXM files as well as iontof images(ITA, ITM a…
      Python
      •
      Apache License 2.0
      •41•1•0•0•Updated May 15, 2025May 15, 2025

    • topofileformats

      Public
      Legacy package for topofileformats (now renamed to AFMReader)
      GNU General Public License v3.0
      •0•0•0•0•Updated May 29, 2024May 29, 2024

    • jupyterlite-topostats

      Public
      Run TopoStats Notebooks directly in your browser.
      jupyternotebookafm
      jupyternotebookafmjupyter-notebookimagingjupyterlite
      Jupyter Notebook
      •0•1•1•0•Updated Nov 1, 2023Nov 1, 2023

    • topo-libasd

      Public
      A fork of @toruniina 's repo for C++11/Python3 library to read/write High Speed AFM data file. This is just to get wheels working.
      C++
      •
      MIT License
      •8•0•0•0•Updated Sep 17, 2023Sep 17, 2023

    • TriplatinNC

      Public
      A repository for the code for processing the TriplatinNC AFM data.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • pyDAMPF

      Public
      pyDAMPF: a Python package for modeling mechanical properties of hygroscopic materials under interaction with a nanoprobe
      Jupyter Notebook
      •3•1•0•0•Updated Jul 27, 2022Jul 27, 2022

    • gwyddion-python

      Public
      A dockerised Gwyddion with functioning Python support based on Linux.
      Dockerfile
      •
      MIT License
      •0•4•0•0•Updated Mar 17, 2022Mar 17, 2022

    • curves

      Public
      A toy repository to test out measuring curvature
      Python
      •
      MIT License
      •0•3•0•1•Updated Feb 15, 2022Feb 15, 2022

    • pyspm-gwyddion

      Public
      Notes on using pySPM functions in tyopostats, in place of those from Gwyddion
      Python
      •0•1•0•0•Updated Jan 17, 2022Jan 17, 2022

    • spym

      Public
      A python package for processing Scanning Probe Microscopy (SPM) data.
      Python
      •
      MIT License
      •8•2•0•0•Updated Dec 20, 2021Dec 20, 2021

    • hyperspy-eg

      Public
      HyperSpy showing an AFM image in a Jupyter notebook on myBinder / colab.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • PyJibe

      Public
      GUI for AFM data analysis with an emphasis on biological specimens
      Python
      •
      GNU General Public License v3.0
      •10•0•0•0•Updated Aug 3, 2021Aug 3, 2021

    • afmformats

      Public
      Python library for reading common AFM file formats
      Python
      •
      MIT License
      •10•0•0•0•Updated Aug 2, 2021Aug 2, 2021

    • image-analysis

      Public
      MATLAB
      •1•1•0•0•Updated Jun 17, 2021Jun 17, 2021

    • home

      Public
      A place for information and discussions.
      0•2•1•0•Updated Dec 16, 2020Dec 16, 2020

    • AFM_Youngs_modulus_fit

      Public
      matlab coding for AFM raw data post-processing > Hertz model to obtain cell Young's modulus
      MATLAB
      •2•0•0•0•Updated Apr 4, 2019Apr 4, 2019
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