Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •26•50•6•0•Updated Sep 16, 2025Sep 16, 2025

• BiocReporting

  Public
  Public repo for Bioconductor project reporting 2022

  TeX

  •7•0•1•0•Updated Sep 16, 2025Sep 16, 2025

• IRanges

  Public
  Foundation of integer range manipulation in Bioconductor

  bioconductor-packagecore-package

  R

  •11•22•9•4•Updated Sep 16, 2025Sep 16, 2025

• workshop-contributions

  Public
  Repository for managing contributions to workshop.bioconductor.org

  HTML

  •0•5•9•0•Updated Sep 15, 2025Sep 15, 2025

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•32•5•0•Updated Sep 15, 2025Sep 15, 2025

• Bioc.gff

  Public
  Read and write GFF and GTF files

  R

  •0•0•0•0•Updated Sep 15, 2025Sep 15, 2025

• SummarizedExperiment

  Public
  A container (S4 class) for matrix-like assays

  bioconductor-packagecore-package

  R

  •9•36•25•0•Updated Sep 15, 2025Sep 15, 2025

• GenomicRanges

  Public
  Representation and manipulation of genomic intervals

  bioconductor-packagecore-package

  R

  •19•46•29•3•Updated Sep 15, 2025Sep 15, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Dockerfile

  •

  Artistic License 2.0

  •31•82•16•4•Updated Sep 15, 2025Sep 15, 2025

• UniProt.ws

  Public
  R Interface to UniProt Web Services

  bioconductor-packagecore-package

  R

  •7•7•0•0•Updated Sep 15, 2025Sep 15, 2025

• bioc_coc_multilingual

  Public
  Multilingual version of the Bioconductor Code of Conduct

  bioconductorhacktoberfest

  CSS

  •16•2•6•0•Updated Sep 13, 2025Sep 13, 2025

• S4Vectors

  Public
  Foundation of vector-like and list-like containers in Bioconductor

  bioconductor-packagecore-package

  R

  •21•18•24•1•Updated Sep 13, 2025Sep 13, 2025

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-packageu24ca289073

  R

  •11•27•19•0•Updated Sep 13, 2025Sep 13, 2025

• GenomicAlignments

  Public
  Representation and manipulation of short genomic alignments

  bioconductor-packagecore-package

  R

  •15•11•8•3•Updated Sep 13, 2025Sep 13, 2025

• XVector

  Public
  Foundation of external vector representation and manipulation in Bioconductor

  bioconductor-packagecore-package

  C

  •2•3•1•1•Updated Sep 13, 2025Sep 13, 2025

• BSgenome

  Public
  Software infrastructure for efficient representation of full genomes and their SNPs

  bioconductor-packagecore-package

  R

  •8•9•8•1•Updated Sep 13, 2025Sep 13, 2025

• Biobase

  Public
  Biobase: Base functions for Bioconductor

  bioconductor-packagecore-package

  R

  •10•9•1•1•Updated Sep 13, 2025Sep 13, 2025

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•25•1•Updated Sep 12, 2025Sep 12, 2025

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •19•9•9•1•Updated Sep 12, 2025Sep 12, 2025

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  conferencebioconductoreuropean

  HTML

  •4•3•3•0•Updated Sep 12, 2025Sep 12, 2025

• BiocAsia2025

  Public
  CSS

  •

  MIT License

  •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •12•10•56•3•Updated Sep 11, 2025Sep 11, 2025

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •115•130•12•0•Updated Sep 11, 2025Sep 11, 2025

• BioC2026

  Public
  conference website for Bioconductor 2026

  CSS

  •

  MIT License

  •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

• BiocParallel

  Public
  Bioconductor facilities for parallel evaluation

  bioconductor-packagecore-packageu24ca289073

  R

  •

  Other

  •32•68•29•1•Updated Sep 10, 2025Sep 10, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •42•27•15•11•Updated Sep 10, 2025Sep 10, 2025

• biocViews

  Public
  Categorized views of R package repositories

  bioconductor-packagecore-package

  R

  •4•4•5•4•Updated Sep 4, 2025Sep 4, 2025

• Rsamtools

  Public
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

  bioconductor-packagecore-package

  R

  •

  Other

  •28•28•14•2•Updated Sep 3, 2025Sep 3, 2025

• h5mread

  Public
  A fast HDF5 reader

  u24ca289073

  C

  •0•1•0•0•Updated Aug 29, 2025Aug 29, 2025