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    17 repositories

    • immApex

      Public
      Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning
      R
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      Other
      •3•15•0•0•Updated Aug 22, 2026Aug 22, 2026

    • scRepertoire

      Public
      A toolkit for single-cell immune profiling
      R
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      Other
      •72•376•0•0•Updated Aug 14, 2026Aug 14, 2026

    • immLynx

      Public
      Bridge for Immune Receptor R and Python Support
      R
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      Other
      •0•3•0•0•Updated Aug 10, 2026Aug 10, 2026

    • escape

      Public
      Easy single cell analysis platform for enrichment
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      Other
      •23•232•0•0•Updated Aug 9, 2026Aug 9, 2026

    • Uveitis-Atlas

      Public
      Code for the Uveitis Atlas: paired eye + blood single-cell RNA and TCR/BCR analysis of viral vs non-infectious uveitis (Paley Lab).
      bioinformaticsrstatsscrna-seq
      bioinformaticsrstatsscrna-seqtcrsingle-cellbcrseuratimmune-repertoireuveitisocular-immunology
      R
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      MIT License
      •0•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • .github

      Public
      0•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • bHIVE

      Public
      B-cell Hybrid Immune Variant Engine
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      Other
      •4•12•0•0•Updated Jun 26, 2026Jun 26, 2026

    • Ibex

      Public
      Using BCR and expression for sequence embedding
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      Other
      •4•28•0•0•Updated Jun 12, 2026Jun 12, 2026

    • immGLIPH

      Public
      R
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      Other
      •0•6•1•0•Updated May 20, 2026May 20, 2026

    • immGLIPH-benchmark

      Public
      Concordance benchmark of immGLIPH against GLIPH and GLIPH2
      R
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      MIT License
      •0•0•0•0•Updated May 3, 2026May 3, 2026

    • immReferent

      Public
      An Interface for Immune Receptor and HLA Gene Reference Data
      R
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      Other
      •1•9•0•0•Updated Apr 3, 2026Apr 3, 2026

    • deepMatchR

      Public
      Tools for Clinical HLA testing
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      Other
      •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

    • Trex

      Public
      Using TCR and expression for sequence embedding
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      Other
      •6•64•2•0•Updated Jan 6, 2026Jan 6, 2026

    • tcrpheno

      Public
      Applies logistic regression model using TCR sequence for T cell fate
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      Other
      •2•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • EpletAnalysis

      Public
      R
      •1•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • CordBat

      Public
      Batch Effect Correction for Large Scale Metabolomics
      R
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      Other
      •2•2•0•0•Updated May 8, 2025May 8, 2025

    • scRepertoire.v2_manuscript

      Public
      R
      •0•0•0•1•Updated Apr 20, 2025Apr 20, 2025
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