All

80 repositories

StarBASE-GP
Public
Python
•
GNU General Public License v3.0
•1•4•1•1•Updated Mar 25, 2026Mar 25, 2026
ADSP_ADTF
Public
0•0•0•0•Updated Jan 20, 2026Jan 20, 2026
ADSP_Network_Score
Public
0•0•0•0•Updated Sep 26, 2025Sep 26, 2025
SynTwin
Public
SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients
Jupyter Notebook
•1•1•0•0•Updated Sep 24, 2025Sep 24, 2025
tpot
Public
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
python data-science machine-learning
python data-science machine-learning automation random-forest scikit-learn aiml model-selection hyperparameter-optimization feature-engineering
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•1.6k•10k•297•12•Updated Sep 11, 2025Sep 11, 2025
scikit-mdr
Public
A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
Python
•
MIT License
•24•126•11•0•Updated Jun 10, 2025Jun 10, 2025
escargot
Public
Python
•
MIT License
•6•35•5•0•Updated Jun 2, 2025Jun 2, 2025
AddictionKB
Public
A knowledge base for AI research in addiction
aiml knowledge-graph addiction
aiml knowledge-graph addiction automl nlm aids substance-use-disorder
Python
•0•1•0•0•Updated Apr 2, 2025Apr 2, 2025
KRAGEN
Public
Software to implement GoT with a weviate vectorized database
Python
•
MIT License
•45•683•18•0•Updated Mar 25, 2025Mar 25, 2025
pmlbr
Public
pmlb is an R interface to the Penn Machine Learning Benchmarks data repository
R
•
Other
•2•10•0•0•Updated Mar 11, 2025Mar 11, 2025
pmlb
Public
PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
Python
•
MIT License
•142•859•20•0•Updated Feb 25, 2025Feb 25, 2025
tpot2
Public
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
python data-science machine-learning
python data-science machine-learning automation random-forest scikit-learn aiml model-selection hyperparameter-optimization feature-engineering
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•33•251•52•2•Updated Feb 4, 2025Feb 4, 2025
PAGER
Public
PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER…
encoding gwas genetics
encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects
Python
•1•3•0•0•Updated Jan 3, 2025Jan 3, 2025
Aliro
Public
Aliro: AI-Driven Data Science
aiml alzheimers-disease automl
aiml alzheimers-disease automl alzheimer alzheimers nia adsp ag066833 u01ag066833
JavaScript
•
GNU General Public License v3.0
•61•237•58•31•Updated Oct 7, 2024Oct 7, 2024
AlzKB
Public
aiml alzheimers-disease automl
aiml alzheimers-disease automl alzheimer alzheimers nia adsp ag066833 u01ag066833
Python
•2•24•0•0•Updated Sep 3, 2024Sep 3, 2024
latent_phenotype_project
Public
Python
•
MIT License
•0•2•0•0•Updated Aug 9, 2024Aug 9, 2024
PSB25_ADSP_GIG
Public
0•0•0•0•Updated Aug 1, 2024Aug 1, 2024
AlzKB-updates
Public
Jupyter Notebook
•0•1•0•0•Updated Jul 23, 2024Jul 23, 2024
STAR_outliers
Public
Python
•
MIT License
•1•1•1•0•Updated May 18, 2024May 18, 2024
tpot2_imputetest
Public
Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•33•1•0•0•Updated May 1, 2024May 1, 2024
tpot2-feedstock
Public
A conda-smithy repository for tpot2.
BSD 3-Clause "New" or "Revised" License
•4•0•0•0•Updated Apr 24, 2024Apr 24, 2024
GPT4_and_Review
Public
Using GPT-4 to write a scientific review article: a pilot evaluation study
Python
•0•4•0•0•Updated Apr 10, 2024Apr 10, 2024
autoqtl
Public
Automated Quantitative Trait Locus Analysis (AutoQTL)
Python
•
GNU General Public License v3.0
•3•10•0•0•Updated Mar 5, 2024Mar 5, 2024
epistasis_detection
Public
Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the in…
Jupyter Notebook
•1•2•0•0•Updated Feb 29, 2024Feb 29, 2024
EBIC.jl
Public
EBIC - a biclustering algorithm in Julia
Julia
•
MIT License
•0•7•0•0•Updated Jan 24, 2024Jan 24, 2024
aliroed-pi-gen
Public
Tool used to create the AliroEd Raspberry Pi OS images
Shell
•
BSD 3-Clause "New" or "Revised" License
•1.8k•0•0•0•Updated Jan 11, 2024Jan 11, 2024
PSB2024_spine
Public
Python
•0•0•0•0•Updated Sep 25, 2023Sep 25, 2023
tpot2_gptp_experiments
Public
Jupyter Notebook
•0•0•0•0•Updated Jul 31, 2023Jul 31, 2023
tpot2-test
Public
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•33•0•0•0•Updated May 31, 2023May 31, 2023
STAR_outliers_figure_and_table_generation
Public
Python
•0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

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Epistasis Lab at Cedars Sinai

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80 repositories

StarBASE-GP

ADSP_ADTF

ADSP_Network_Score

SynTwin

tpot

scikit-mdr

escargot

AddictionKB

KRAGEN

pmlbr

pmlb

tpot2

PAGER

Aliro

AlzKB

latent_phenotype_project

PSB25_ADSP_GIG

AlzKB-updates

STAR_outliers

tpot2_imputetest

tpot2-feedstock

GPT4_and_Review

autoqtl

epistasis_detection

EBIC.jl

aliroed-pi-gen

PSB2024_spine

tpot2_gptp_experiments

tpot2-test

STAR_outliers_figure_and_table_generation

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Repositories list

80 repositories