Imageomics Institute

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86 repositories

pybioclip
Public
Python package that simplifies using the BioCLIP foundation model.
Python
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MIT License
•7•37•6•1•Updated Sep 18, 2025Sep 18, 2025
HDR-SMood-Challenge-sample
Public
Sample Submission Repository for the 2025 HDR Scientific Mood Challenge (Modeling out of distribution).
sample-code out-of-distribution beetles ml-challenge
Python
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MIT License
•0•0•0•0•Updated Sep 18, 2025Sep 18, 2025
HDR-SMood-Challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Scientific Mood ML Challenge.
out-of-distribution beetles ml-challenge
Python
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MIT License
•0•2•0•0•Updated Sep 16, 2025Sep 16, 2025
Imageomics-guide
Public
Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
git metadata documentation data code guide best-practices models projects collaboration
Python
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Creative Commons Zero v1.0 Universal
•0•4•12•1•Updated Sep 15, 2025Sep 15, 2025
Collaborative-distributed-science-guide
Public template
Template guide to collaborative work, including GitHub and Hugging Face workflows. Co-developed with the Imageomics Guide.
git metadata documentation data code guide best-practices models projects collaboration
Python
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Creative Commons Zero v1.0 Universal
•0•0•2•0•Updated Sep 15, 2025Sep 15, 2025
bioclip-vector-db
Public
Vector database training data retrieval of BioCLIP-embedded nearest neighbors.
Jupyter Notebook
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MIT License
•1•0•7•4•Updated Sep 14, 2025Sep 14, 2025
bioclip-2
Public
Repository for the BioCLIP 2 model project.
computer-vision taxonomy biology clip knowledge-guided-machine-learning imageomics
Python
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Other
•6•30•1•0•Updated Sep 12, 2025Sep 12, 2025
naturelab
Public
Bridging Digital and Natural Worlds at The Wilds
drone biology gps-tracker ecology multi-modal camera-traps bioacoustics
Jupyter Notebook
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MIT License
•2•1•0•0•Updated Sep 9, 2025Sep 9, 2025
SST
Public
Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation"
Python
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MIT License
•3•9•0•7•Updated Sep 3, 2025Sep 3, 2025
2018-NEON-beetles-processing
Public
Processing code and exploratory notebooks for BeetlePalooza dataset (2018 NEON Ethanol-preserved Ground Beetles).
annotation images eda segmentation beetles
Jupyter Notebook
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MIT License
•2•0•0•2•Updated Sep 3, 2025Sep 3, 2025
phylo-diffusion
Public
Code Repository for Phylo-Diffusion. Accepted at ECCV 2024
Python
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MIT License
•1•4•1•0•Updated Sep 3, 2025Sep 3, 2025
tree-seedling-detection
Public
improving detection of micro and macro-scale functional traits
Python
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MIT License
•0•2•0•0•Updated Aug 29, 2025Aug 29, 2025
Imageomics-NeurIPS-2025
Public
Imageomics: Discovering Biological Knowledge from Images Using AI workshop at NeurIPS 2025
HTML
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Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Aug 21, 2025Aug 21, 2025
global-egg-trait
Public
Python
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MIT License
•0•0•4•0•Updated Aug 21, 2025Aug 21, 2025
mimicry-madness
Public
Project repo for mimicry exploration during FuncaPalooza 2025!
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Aug 21, 2025Aug 21, 2025
dna-trait-analysis
Public
Goal: to find associations between dna data and visual traits.
Jupyter Notebook
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MIT License
•0•4•7•0•Updated Aug 19, 2025Aug 19, 2025
Beyond-Beetle-Body-Size
Public
Funcapalooza 2025 Beetle Group - exploring traits beyond beetle body size
MIT License
•0•1•0•0•Updated Aug 19, 2025Aug 19, 2025
FuncaPalooza-2025
Public
FuncaPalooza: collaborative hands-on event for extracting functional traits from images at OSU, Aug 18-21, 2025.
Creative Commons Zero v1.0 Universal
•0•5•23•0•Updated Aug 19, 2025Aug 19, 2025
2025-08-15-osu-online
Public
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
HTML
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Other
•0•0•0•0•Updated Aug 15, 2025Aug 15, 2025
hpc-inference
Public
A high-performance computing solution for efficient batch inference on large-scale image datasets.
Python
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MIT License
•0•0•8•1•Updated Aug 13, 2025Aug 13, 2025
Image-Datapalooza-2023
Public
Repository for the Image Datapalooza 2023 event held at OSU in August 2023.
Creative Commons Zero v1.0 Universal
•2•3•8•0•Updated Aug 6, 2025Aug 6, 2025
HDR-anomaly-challenge-sample
Public
Sample Submission Repository for the 2024 HDR Anomaly Challenge
sample-code anomaly-detection butterflies ml-challenge
Jupyter Notebook
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MIT License
•4•6•1•4•Updated Aug 6, 2025Aug 6, 2025
HDR-anomaly-challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Anomaly ML Challenge.
anomaly-detection butterflies hybrid-detection ml-challenge
Python
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MIT License
•1•4•1•4•Updated Aug 6, 2025Aug 6, 2025
mmla
Public
Scripts for MMLA dataset
drones zebra giraffe
Jupyter Notebook
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MIT License
•0•3•0•9•Updated Aug 6, 2025Aug 6, 2025
kabr-tools
Public
Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.
annotation animal-behavior-recognition drone-videos
Python
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MIT License
•0•4•17•8•Updated Aug 6, 2025Aug 6, 2025
ai-ready-infrastructure
Public
Repository for the Requirements Workshop: AI-Ready Ecology/Biodiversity Data Infrastructure.
0•0•0•0•Updated Jul 31, 2025Jul 31, 2025
TaxonoPy
Public
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
taxonomy alignment hierarchy tree-of-life taxonomic-resolution
Python
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MIT License
•0•3•8•1•Updated Jul 24, 2025Jul 24, 2025
TraitBlender
Public
Blender addon for simulating raw datasets under known evolutionary models
images evolution phylogenetic-trees phylogenetics simulations raw-data blender-addon 3d-models
Python
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MIT License
•1•1•0•0•Updated Jul 22, 2025Jul 22, 2025
TreeOfLife-toolbox
Public
Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.
face-detection citizen-science image-filtering animal-detection specimen-records tree-of-life imageomics dataset-processing
Jupyter Notebook
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MIT License
•0•1•9•19•Updated Jul 14, 2025Jul 14, 2025
pygbif
Public
GBIF Python client
Python
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MIT License
•36•0•0•1•Updated Jul 2, 2025Jul 2, 2025