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    22 repositories

    • SMR

      Public
      C++
      •
      GNU General Public License v2.0
      •0•4•0•0•Updated Apr 7, 2026Apr 7, 2026

    • gsMap

      Public
      Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
      gwasspatial-datastatistical-genetics
      gwasspatial-datastatistical-geneticsspatial-data-analysisbioinformatics-toolspatial-transcriptomics
      Python
      •
      MIT License
      •16•202•3•0•Updated Apr 7, 2026Apr 7, 2026

    • PIGA

      Public
      Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly
      Python
      •
      MIT License
      •4•35•0•0•Updated Mar 31, 2026Mar 31, 2026

    • OSCA

      Public
      C++
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Mar 27, 2026Mar 27, 2026

    • spatial-vista-py

      Public
      Visualize 3D ST data in Jupyter
      JavaScript
      •0•15•0•0•Updated Mar 25, 2026Mar 25, 2026

    • fm3-gfa

      Public
      Graph Layout and Visualization for GFA Files with FM3 algorithm
      C++
      •0•6•0•0•Updated Feb 11, 2026Feb 11, 2026

    • GCTA

      Public
      C++
      •
      GNU General Public License v3.0
      •3•11•2•1•Updated Feb 3, 2026Feb 3, 2026

    • GAMMA

      Public
      Genetic Associations to Mechanisms and Medicine Analysis.
      R
      •
      MIT License
      •0•10•0•0•Updated Jan 21, 2026Jan 21, 2026

    • xMAGIC

      Public
      Shell
      •2•4•0•0•Updated Dec 12, 2025Dec 12, 2025

    • 1KCP-analysis

      Public
      The analysis of the 1KCP
      Python
      •
      MIT License
      •4•9•0•0•Updated Dec 3, 2025Dec 3, 2025

    • PanCell-eQTL

      Public
      A mutli-tissue, multi-ancestry sc-eQTL atlas
      R
      •0•6•0•0•Updated Nov 14, 2025Nov 14, 2025

    • SMR-Portal

      Public
      SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.
      Vue
      •
      MIT License
      •4•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • SlurmSlim

      Public
      Optimize Slurm Job Scheduling with MCP-Based Memory Estimation
      Python
      •0•2•0•0•Updated Mar 23, 2025Mar 23, 2025

    • adview

      Public
      Adata Viewer: Head/Less/Shape h5ad file in terminal
      Rust
      •
      MIT License
      •0•12•0•0•Updated Mar 19, 2025Mar 19, 2025

    • MeDuSA

      Public
      MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
      single-cell
      single-cell
      R
      •3•44•0•0•Updated Feb 20, 2025Feb 20, 2025

    • MeDuSAJ

      Public
      C++
      •0•3•0•0•Updated Jan 14, 2025Jan 14, 2025

    • depthmate

      Public
      calculate reference and alternate base depth in tumor-normal pair matched bam
      Rust
      •0•2•0•0•Updated Dec 30, 2024Dec 30, 2024

    • .github

      Public
      JianYang Lab
      0•1•0•0•Updated Dec 21, 2024Dec 21, 2024

    • gsmr2

      Public
      The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics to test for a putative …
      R
      •1•20•1•0•Updated Apr 26, 2024Apr 26, 2024

    • gsmr

      Public
      R
      •0•3•0•0•Updated Jan 31, 2024Jan 31, 2024

    • crussmap

      Public
      crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
      rustbioinformatics
      rustbioinformatics
      Rust
      •
      MIT License
      •2•22•0•0•Updated May 4, 2023May 4, 2023

    • rsam

      Public
      Random sampler for text-based data in Rust using reservoir sampling algorithm.
      sampledata-science
      sampledata-science
      Rust
      •
      GNU General Public License v3.0
      •0•9•1•0•Updated Apr 12, 2023Apr 12, 2023
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