Repositories list

• Diamonds

  Public
  Python

  •0•0•0•0•Updated May 4, 2025May 4, 2025

• Piezo-manuscript-resouces

  Public
  Contains the codes used for simulations and data analysis within "Kumar N, Mim MS, Levis M, Unger M, Miranda G, Robinett T, Zartman JJ. Piezo regulates epitheli…

  Jupyter Notebook

  •1•0•0•0•Updated Jun 6, 2024Jun 6, 2024

• ReverseEngineeringMorphogenesis

  Public
  Jupyter Notebook

  •2•1•7•0•Updated Aug 17, 2023Aug 17, 2023

• MAPPER

  Public
  Here is a repository for the manuscript titled MAPPER: An open-source, high dimensional image analysis pipeline unmasks differential regulation of Drosophila wi…

  HTML

  •

  GNU Lesser General Public License v2.1

  •3•4•0•0•Updated Apr 12, 2022Apr 12, 2022

• MSELab_Calcium_Cartography_2021

  Public
  This is a code repository for the manuscript titled: From spikes to intercellular waves: tuning intercellular Ca2+ signaling dynamics modulates organ size contr…

  Jupyter Notebook

  •

  GNU Lesser General Public License v2.1

  •4•2•0•1•Updated Feb 27, 2022Feb 27, 2022

• intercellular_calcium_wave_toolkit

  Public
  Toolkit for spatial analysis of calcium wave dynamics

  MATLAB

  •3•0•0•0•Updated Nov 19, 2018Nov 19, 2018

• EpiscaleAnalysis

  Public
  Analysis for Epi-Scale model

  MATLAB

  •2•0•0•0•Updated Oct 18, 2018Oct 18, 2018

• embryoSimulation

  Public
  MATLAB

  •2•0•0•0•Updated Oct 18, 2018Oct 18, 2018

• HighContentAnalysis

  Public
  HighContentAnalysis: Analysis code for multi-temporal-scale experimentation. Eg 24 hour long-term ecad imaging combined with several high-frequency calcium vide…

  MATLAB

  •1•0•0•0•Updated May 9, 2017May 9, 2017

• calciumWaveModeling

  Public
  MATLAB implementation of calcium signaling in the Drosophila wing disc

  Mathematica

  •1•0•0•0•Updated Sep 26, 2016Sep 26, 2016

• calciumWaveAnalysis

  Public
  calciumWaveAnalysis: statistical analysis for either experimental or simulation calcium oscillation

  MATLAB

  •1•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• stitchingAndVignettingCorrection

  Public
  Code which takes raw data and stitches it with vignetting correction.

  MATLAB

  •1•0•0•0•Updated Jan 19, 2016Jan 19, 2016

• embryoStatistics

  Public
  EmbryoStatistics: network analysis of embryo segmentation topology

  MATLAB

  •1•0•0•0•Updated Nov 23, 2015Nov 23, 2015