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    20 repositories

    • Co-substrate-induced-flux-switching-at-branch-points-can-explain-overflow-metabolism

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • Cyano_Gliding_ImageAnalysis_and_Model

      Public
      Files associated with cyanobacteria gliding motility analysis using image processing and biophysical model
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • STRONG_pipeline_avon

      Public
      Shell
      •1•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • ThT_CellularDistribution_ImagesAndModel

      Public
      A simple model describing the membrane-potential dependent distribution of a cationic dye and subsequent binding of the dye in the cell
      MATLAB
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • CoSubstrateDynamics

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 25, 2023Jan 25, 2023

    • ChemChaste

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Apr 1, 2022Apr 1, 2022

    • MetQy

      Public
      Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
      data-miningmetabolismr-packagekegg
      R
      •
      Other
      •10•18•5•0•Updated Jan 21, 2022Jan 21, 2022

    • ModellingApHProbe

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 7, 2021Jul 7, 2021

    • FBAhv

      Public
      FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
      cobrapymetabolic-modelsfba
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•0•Updated Oct 2, 2020Oct 2, 2020

    • evolutionOfShapes

      Public
      Simple processing script for shape evolution - user is selective force
      Processing
      •0•0•0•0•Updated Jun 29, 2020Jun 29, 2020

    • micodymora

      Public
      Simulation framework for microbial population dynamics (read related publication here: https://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2020.0053)
      Python
      •2•5•0•0•Updated Mar 25, 2020Mar 25, 2020

    • biojazz

      Public
      Evolve and Design Biochemical Reaction Networks (read related publication here: https://pubmed.ncbi.nlm.nih.gov/26101250/)
      Perl
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jun 18, 2018Jun 18, 2018

    • chemotaxis-games

      Public
      This repository contains simple scripts which can be used explore chemotaxis strategies used by bacteria.
      Processing
      •
      MIT License
      •1•0•0•0•Updated Jun 15, 2018Jun 15, 2018

    • oss-lab.github.io

      Public
      Webpage of code resources from OSS lab @ University of Warwick
      CSS
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 24, 2017Apr 24, 2017

    • bistability

      Public
      Project about bistability in signalling networks
      Mathematica
      •0•0•0•0•Updated Feb 3, 2016Feb 3, 2016

    • scaffoldTitration

      Public
      To study different network motifs
      Mathematica
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 13, 2015Aug 13, 2015

    • adaptiveNetworks

      Public
      study of adaptive networks
      MATLAB
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 11, 2015Aug 11, 2015

    • fitnessFunctions

      Public
      Plotting fitness functions for BioJazz models
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 5, 2015Feb 5, 2015

    • anc

      Public
      Mirror of ANC code
      Perl
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 29, 2013Oct 29, 2013

    • facile

      Public
      Mirror of facile code
      Perl
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 16, 2013Oct 16, 2013