Repositories list

• comptox_ai

  Public
  ComptoxAI - An artificial Intelligence toolkit for computational toxicology

  dataaineo4j+ 5

  dataaineo4jontologygraph-databasephenotypesdiseasesgraph-machine-learning

  Python

  •

  Other

  •6•19•15•4•Updated Mar 12, 2026Mar 12, 2026

• BrainKG

  Public
  A biomedical knowledge graph for neurodegeneration

  MIT License

  •0•0•0•0•Updated Feb 26, 2026Feb 26, 2026

• geospatial-preeclampsia-geobirth

  Public
  data-sciencemachine-learninggeospatial+ 5

  data-sciencemachine-learninggeospatialinformaticsenvironmental-healthmaternal-healthpreeclampsiasocial-determinants-of-health

  R

  •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

• ista

  Public
  A flexible toolkit for manipulating and building knowledge graphs

  C++

  •

  MIT License

  •1•2•0•0•Updated Feb 14, 2026Feb 14, 2026

• romanolab.org

  Public
  romanolab.org website

  HTML

  •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

• poppy

  Public
  Phyto-Ontology Platform for Pharmacology (POPPy) is built to aid in drug discovery from phytotherapeutic sources.

  Python

  •

  Other

  •1•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• phytotherapy-discovery

  Public
  A lightweight companion repo for Phytotherapy Discovery through Ontology-Guided Machine Learning, containing a modified CTAPred workflow to predict protein targ…

  Python

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• repurposing-prioritization-dashboard

  Public
  TypeScript

  •0•0•0•0•Updated Nov 30, 2025Nov 30, 2025

• repurposing-prioritization

  Public
  An AI-driven framework for computing drug repurposing prioritization scores

  Python

  •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

• ih-hackathon-pregnancy-clock

  Public
  Analysis of the immune clock in pregnancy for Penn IH hackathon 2025

  Jupyter Notebook

  •7•0•0•0•Updated Feb 1, 2025Feb 1, 2025

• SemMol

  Public
  Semantic Knowledge Improves Molecular Machine Learning for Chemical Toxicity Prediction

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• mimic-gnn-diagnosis

  Public
  Knowledge graphs and GNNs for disease classification

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• graphml_models

  Public
  A gallery of graph machine learning (GraphML) models for biomedical knowledge graphs

  aigraphsml+ 3

  aigraphsmlknowledge-graphgraphmlheterogeneous-graph-neural-network

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

• explainable-qsar

  Public
  Code and analysis related to explainable QSAR models for chemical toxicity

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

• telomere-pipeline

  Public
  Pipeline for analyzing nanopore sequencing data to study telomeres

  Shell

  •

  MIT License

  •0•0•0•0•Updated May 22, 2023May 22, 2023

• .github

  Public
  0•0•0•0•Updated Nov 1, 2022Nov 1, 2022