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    • 2025-09-09-workshop

      Public
      CodeRefinery workshop September/October 2025
      HTML
      •
      Creative Commons Attribution 4.0 International
      •3•0•1•0•Updated Sep 17, 2025Sep 17, 2025

    • video-processing

      Public
      Processed videos from CodeRefinery (and the workspace while creating them)
      Makefile
      •3•4•5•0•Updated Sep 17, 2025Sep 17, 2025

    • ffmpeg-editlist

      Public
      Script ffmpeg video cutting
      Python
      •
      MIT License
      •0•21•2•0•Updated Sep 17, 2025Sep 17, 2025

    • modular-type-along-exercise

      Public
      This repo is for modular code development exercises in coderefinery workshop.
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • obs-cr

      Public
      Python
      •
      MIT License
      •0•1•9•1•Updated Sep 17, 2025Sep 17, 2025

    • manuals

      Public
      Diverse operation manuals for CodeRefinery workshops and lesson design.
      Python
      •
      Creative Commons Attribution 4.0 International
      •14•9•58•0•Updated Sep 16, 2025Sep 16, 2025

    • presentations

      Public
      Presentation slides.
      CSS
      •4•3•0•0•Updated Sep 10, 2025Sep 10, 2025

    • workshop-intro

      Public
      Introduction and practical information for workshops.
      Creative Commons Attribution 4.0 International
      •11•6•2•0•Updated Sep 8, 2025Sep 8, 2025

    • git-collaborative

      Public
      Collaborative distributed version control lesson.
      githubgitlessoncollaborativecarpentry-lessonforking
      Python
      •
      Creative Commons Attribution 4.0 International
      •44•10•6•0•Updated Sep 8, 2025Sep 8, 2025

    • reproducible-research

      Public
      Reproducible research - Preparing code to be usable by you and others in the future
      reproduciblefaircarpentry-lesson
      Python
      •
      Creative Commons Attribution 4.0 International
      •41•31•14•0•Updated Sep 4, 2025Sep 4, 2025

    • installation

      Public
      CodeRefinery workshop software installation instructions.
      Python
      •
      Creative Commons Attribution 4.0 International
      •15•3•10•1•Updated Sep 2, 2025Sep 2, 2025

    • git-calendar

      Public template
      Python
      •
      MIT License
      •1•1•2•0•Updated Sep 1, 2025Sep 1, 2025

    • calendar

      Public
      CodeRefinery calendar (via github pages)
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •2•2•4•0•Updated Aug 27, 2025Aug 27, 2025

    • coderefinery.org

      Public
      Coderefinery project website.
      HTML
      •
      Creative Commons Attribution 4.0 International
      •24•10•15•2•Updated Aug 25, 2025Aug 25, 2025

    • git-intro

      Public
      Introduction to version control with Git - Why we want to track versions and how to go back in time to a working version
      gitcarpentry-lesson
      Python
      •
      Creative Commons Attribution 4.0 International
      •67•37•18•0•Updated Aug 22, 2025Aug 22, 2025

    • modular-type-along

      Public
      Modular code development - Making reusing parts of your code easier
      demomodular-design
      Python
      •
      Creative Commons Attribution 4.0 International
      •9•4•11•0•Updated Aug 22, 2025Aug 22, 2025

    • documentation

      Public
      How to document your research software
      documentationreadthedocssphinx-doccarpentry-lesson
      Python
      •
      Creative Commons Attribution 4.0 International
      •51•31•14•0•Updated Aug 15, 2025Aug 15, 2025

    • testing

      Public
      Automated testing - Preventing yourself and others from breaking your functioning code
      testingcarpentry-lesson
      C++
      •
      Creative Commons Attribution 4.0 International
      •38•12•12•1•Updated Aug 15, 2025Aug 15, 2025

    • jupyter

      Public
      Jupyter notebooks - A tool to write and share executable notebooks and data visualization
      carpentry-lesson
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •51•9•8•0•Updated Aug 15, 2025Aug 15, 2025

    • social-coding

      Public
      Social coding and open software - What can you do to get credit for your code and to allow reuse
      software-licensingsocial-codingsoftware-citation
      Python
      •
      Creative Commons Attribution 4.0 International
      •15•9•9•0•Updated Aug 15, 2025Aug 15, 2025

    • coderefinery-artwork

      Public
      CodeRefinery artwork and logos.
      0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • posters

      Public
      Our posters.
      0•0•2•1•Updated Jul 18, 2025Jul 18, 2025

    • research-software-engineering

      Public
      "CodeRefinery in 1 hour" - What are good tools and practices in research software engineering?
      Python
      •
      Creative Commons Attribution 4.0 International
      •2•3•0•0•Updated Jul 11, 2025Jul 11, 2025

    • feedback

      Public
      Collection of "sticky-note feedback" we have received over the years.
      0•0•1•0•Updated Jul 7, 2025Jul 7, 2025

    • sphinx-lesson-template

      Public template
      Empty template lesson
      Python
      •10•5•1•1•Updated Jun 26, 2025Jun 26, 2025

    • train-the-trainer

      Public
      Our train-the-trainer course.
      Python
      •
      Creative Commons Attribution 4.0 International
      •3•5•10•1•Updated Jun 24, 2025Jun 24, 2025

    • template-workshop-webpage

      Public template
      You can create workshop pages from this template.
      HTML
      •
      Creative Commons Attribution 4.0 International
      •4•6•0•0•Updated Jun 23, 2025Jun 23, 2025

    • BioNT_Lesson_Accelerated_Genomics

      Public
      Lesson materials for Accelerated Genomics introduction
      Python
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • NumPy-and-Pandas-fundamentals-for-handling-biological-datasets

      Public
      First Module of BioNT Applied Machine Learning for Biological data course
      Jupyter Notebook
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • sphinx-localtime

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025