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    30 repositories

    • wf-metagenomics

      Public
      Metagenomic classification of long-read sequencing data
      Python
      •
      Other
      •29•94•8•0•Updated Sep 11, 2025Sep 11, 2025

    • fastcat

      Public
      Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
      C
      •
      Other
      •4•44•4•0•Updated Sep 9, 2025Sep 9, 2025

    • wf-bacterial-genomes

      Public
      Small variant calling for haploid samples
      Python
      •
      Other
      •20•42•8•0•Updated Aug 29, 2025Aug 29, 2025

    • wf-basecalling

      Public
      Nextflow
      •
      Other
      •23•45•15•1•Updated Aug 28, 2025Aug 28, 2025

    • wf-teloseq

      Public
      Python
      •
      Other
      •0•3•5•0•Updated Aug 20, 2025Aug 20, 2025

    • wf-human-variation

      Public
      Nextflow
      •
      Other
      •68•134•30•0•Updated Aug 14, 2025Aug 14, 2025

    • wf-single-cell

      Public
      Python
      •
      Other
      •46•95•16•0•Updated Aug 14, 2025Aug 14, 2025

    • wf-template

      Public
      Nextflow workflow template repository
      Python
      •
      Other
      •35•17•0•0•Updated Aug 14, 2025Aug 14, 2025

    • wf-aav-qc

      Public
      Python
      •
      Other
      •10•8•11•0•Updated Aug 8, 2025Aug 8, 2025

    • wf-somatic-variation

      Public
      Nextflow
      •
      Other
      •11•19•18•0•Updated Aug 7, 2025Aug 7, 2025

    • wf-trio

      Public
      Nextflow
      •
      Other
      •1•3•5•0•Updated Aug 6, 2025Aug 6, 2025

    • wf-transcriptomes

      Public
      Nextflow
      •
      Other
      •42•104•13•0•Updated Aug 1, 2025Aug 1, 2025

    • ezcharts

      Public
      Python
      •
      Other
      •0•22•0•0•Updated Jun 20, 2025Jun 20, 2025

    • wf-clone-validation

      Public
      Python
      •
      Other
      •28•38•5•0•Updated Jun 19, 2025Jun 19, 2025

    • wf-flu

      Public
      Nextflow
      •
      Other
      •6•18•2•0•Updated Jun 19, 2025Jun 19, 2025

    • emg-viral-pipeline

      Public
      VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
      Python
      •
      Apache License 2.0
      •21•2•0•0•Updated May 15, 2025May 15, 2025

    • wf-alignment

      Public
      Python
      •
      Other
      •22•29•4•0•Updated May 12, 2025May 12, 2025

    • wf-mpx

      Public archive
      Nextflow
      •
      Other
      •7•7•1•0•Updated Apr 29, 2025Apr 29, 2025

    • wf-artic

      Public archive
      ARTIC SARS-CoV-2 workflow and reporting
      Nextflow
      •
      Other
      •36•50•11•0•Updated Apr 25, 2025Apr 25, 2025

    • wf-tb-amr

      Public archive
      Python
      •
      Other
      •1•4•1•0•Updated Apr 24, 2025Apr 24, 2025

    • wf-cas9

      Public archive
      Nextflow
      •
      Other
      •2•6•2•0•Updated Apr 24, 2025Apr 24, 2025

    • wf-amplicon

      Public
      Python
      •
      Other
      •10•39•5•0•Updated Apr 14, 2025Apr 14, 2025

    • wf-16s

      Public
      Nextflow
      •
      Other
      •6•36•8•0•Updated Apr 14, 2025Apr 14, 2025

    • wf-pore-c

      Public
      Nextflow
      •
      Other
      •11•44•12•0•Updated Feb 14, 2025Feb 14, 2025

    • modbam2bed

      Public archive
      C
      •
      Other
      •9•49•0•0•Updated Aug 23, 2024Aug 23, 2024

    • pore-c-py

      Public
      Python
      •
      Other
      •5•14•1•0•Updated Aug 14, 2024Aug 14, 2024

    • pychopper

      Public
      cDNA read preprocessing
      Python
      •
      Other
      •9•78•13•0•Updated Jul 25, 2024Jul 25, 2024

    • kraken2-server

      Public
      Kraken2 Server
      C++
      •
      Other
      •3•22•0•0•Updated Jan 23, 2024Jan 23, 2024

    • igv-jupyterlab

      Public archive
      Integrate Genome Viewer for JupyterLab 3
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•0•0•Updated Aug 25, 2023Aug 25, 2023

    • github_release

      Public
      Make Github release pages
      Python
      •
      Other
      •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023