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    79 repositories

    • civic-v2

      Public
      CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
      cancervariantscancer-genomicsbiocurationnci-itcrvariant-curation
      TypeScript
      •
      MIT License
      •7•24•73•10•Updated Sep 19, 2025Sep 19, 2025

    • peptide-sequence-synthesis

      Public
      Python
      •0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • rnabio.org

      Public
      website for the rnaseq course
      SCSS
      •
      MIT License
      •41•108•20•1•Updated Sep 17, 2025Sep 17, 2025

    • genviz.org

      Public
      Genomic data interpretation and visualization Workshop
      SCSS
      •
      MIT License
      •4•21•14•2•Updated Sep 17, 2025Sep 17, 2025

    • pmbio.org

      Public
      Website for the precision medicine workshop
      SCSS
      •
      MIT License
      •22•45•13•2•Updated Sep 17, 2025Sep 17, 2025

    • pVACtools

      Public
      Python
      •
      BSD 3-Clause Clear License
      •71•160•92•6•Updated Sep 17, 2025Sep 17, 2025

    • immuno_gcp_wdl_manuscript

      Public
      Tutorial for running immuno.wdl on Google Cloud
      MIT License
      •1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • fusion_review

      Public
      Python
      •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

    • civic-docs

      Public
      Source code for the civicdb.org docs
      civic
      Creative Commons Zero v1.0 Universal
      •9•5•20•2•Updated Sep 10, 2025Sep 10, 2025

    • civic-mcp-server

      Public
      JavaScript
      •
      Other
      •1•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • docker-hla-hd

      Public
      Dockerfile, dictionary and scripts needed to run hla-hd
      C
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • docker-pvactools

      Public
      Python
      •
      Other
      •8•3•0•0•Updated Aug 21, 2025Aug 21, 2025

    • civicpy

      Public
      A python interface for the CIViC db application
      civic
      Python
      •
      MIT License
      •7•11•24•13•Updated Aug 18, 2025Aug 18, 2025

    • griffithlab.org

      Public
      Griffith lab research website
      JavaScript
      •
      MIT License
      •30•17•1•0•Updated Aug 4, 2025Aug 4, 2025

    • civic-meeting

      Public
      Repo for advertising and organizing CIViC unconference/meeting activities
      civiccurationunconferencecivic-meetings
      4•10•19•0•Updated Jul 24, 2025Jul 24, 2025

    • GenVisR

      Public
      Genome data visualizations
      R
      •
      Creative Commons Zero v1.0 Universal
      •65•220•60•4•Updated Jul 8, 2025Jul 8, 2025

    • neoag_vaccine_scripts

      Public
      Python
      •
      MIT License
      •1•0•8•0•Updated Jun 25, 2025Jun 25, 2025

    • pVACtools_Intro_Course

      Public
      Getting started with pVACtools - pVACseq, pVACbind and pVACview
      CSS
      •
      Creative Commons Attribution 4.0 International
      •2•0•0•1•Updated Jun 6, 2025Jun 6, 2025

    • CIVIC_SVI_Course

      Public
      A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines
      CSS
      •
      Creative Commons Attribution 4.0 International
      •2•0•0•1•Updated Jun 6, 2025Jun 6, 2025

    • htlv_integration_sites

      Public
      HTLV-1 integration site analysis notes and scripts
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • docker-vatools

      Public
      Dockerfile
      •1•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • VAtools

      Public
      A set of tools to annotate VCF files with expression and readcount data
      Python
      •
      MIT License
      •13•29•8•0•Updated Mar 4, 2025Mar 4, 2025

    • pVACcompare

      Public
      JavaScript
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • docm

      Public archive
      Retired Project: Rails frontend to The Genome Institute's database of curated mutations (DoCM)
      Ruby
      •
      MIT License
      •5•6•6•0•Updated Oct 15, 2024Oct 15, 2024

    • bigmhc

      Public
      BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
      Jupyter Notebook
      •
      Other
      •11•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • regtools

      Public
      Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
      C++
      •
      MIT License
      •28•131•42•5•Updated Aug 21, 2024Aug 21, 2024

    • usp7_scripts

      Public
      Analysis collaboration with Albert Kim lab - impact of USP7 knockout on splicing
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • DeepImmuno

      Public
      Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
      Jupyter Notebook
      •
      MIT License
      •29•2•0•0•Updated Mar 14, 2024Mar 14, 2024

    • Immuno_Workflow_Course

      Public
      CSS
      •
      MIT License
      •1•0•1•0•Updated Feb 8, 2024Feb 8, 2024

    • civic-client

      Public
      Web client for CIViC: Clinical Interpretations of Variants in Cancer
      cancer-genomicsfront-end-frameworknci-itcrjavascriptciviccancervariants
      JavaScript
      •
      MIT License
      •27•50•229•13•Updated Nov 28, 2023Nov 28, 2023