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This is probably related to the use of the BASE_URL environment variable in JB2 / mystmd. Coming from JB1, I found this initially disorienting, and it took me a while to understand what I was seeing in the documentation. See https://mystmd.org/guide/deployment#deploy-base-url

While you're not deploying a static website, the discussions in these issues may still be helpful: jupyter-book/jupyter-book#2396, jupyter-book/jupyter-book#2477

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@choldgraf
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