openpipelines-bio

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30 packages

annotate/popv
Published Aug 30, 2024 by openpipelines-bio in openpipeline/annotate/popv

406
genetic_demux/cellsnp
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/cellsnp

406
genetic_demux/dsc_pileup
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/dsc_pileup

403
genetic_demux/demuxlet
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/demuxlet

402
annotate/random_forest_annotation
Published Aug 30, 2024 by openpipelines-bio in openpipeline/annotate/random_forest_annotation

401
reference/build_cellranger_arc_reference
Published Aug 30, 2024 by openpipelines-bio in openpipeline/reference/build_cellranger_arc_reference

401
reference/cellranger_mkgtf
Published Aug 30, 2024 by openpipelines-bio in openpipeline/reference/cellranger_mkgtf

399
report/mermaid
Published Aug 30, 2024 by openpipelines-bio in openpipeline/report/mermaid

399
demux/cellranger_atac_mkfastq
Published Aug 30, 2024 by openpipelines-bio in openpipeline/demux/cellranger_atac_mkfastq

399
metadata/join_csv
Published Aug 30, 2024 by openpipelines-bio in openpipeline/metadata/join_csv

399
labels_transfer/xgboost
Published Aug 30, 2024 by openpipelines-bio in openpipeline/labels_transfer/xgboost

399
genetic_demux/souporcell
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/souporcell

398
process_10xh5/filter_10xh5
Published Aug 30, 2024 by openpipelines-bio in openpipeline/process_10xh5/filter_10xh5

398
annotate/svm_annotation
Published Oct 3, 2024 by openpipelines-bio in openpipeline/annotate/svm_annotation

393
convert/from_h5mu_to_seurat
Published Aug 30, 2024 by openpipelines-bio in openpipeline/convert/from_h5mu_to_seurat

370
filter/subset_h5mu
Published Aug 30, 2024 by openpipelines-bio in openpipeline/filter/subset_h5mu

361
convert/from_h5mu_to_h5ad
Published Aug 30, 2024 by openpipelines-bio in openpipeline/convert/from_h5mu_to_h5ad

356
query/cellxgene_census
Published Aug 30, 2024 by openpipelines-bio in openpipeline/query/cellxgene_census

355
files/make_params
Published Aug 30, 2024 by openpipelines-bio in openpipeline/files/make_params

354
correction/cellbender_remove_background_v0_2
Published Aug 30, 2024 by openpipelines-bio in openpipeline/correction/cellbender_remove_background_v0_2

354
mapping/multi_star
Published Aug 30, 2024 by openpipelines-bio in openpipeline/mapping/multi_star

354
transform/scale
Published Aug 30, 2024 by openpipelines-bio in openpipeline/transform/scale

353
dimred/densmap
Published Aug 30, 2024 by openpipelines-bio in openpipeline/dimred/densmap

353
transform/regress_out
Published Aug 30, 2024 by openpipelines-bio in openpipeline/transform/regress_out

352
mapping/star_align_v273a
Published Aug 30, 2024 by openpipelines-bio in openpipeline/mapping/star_align_v273a

351
velocity/scvelo
Published Aug 30, 2024 by openpipelines-bio in openpipeline/velocity/scvelo

349
mapping/multi_star_to_h5mu
Published Aug 30, 2024 by openpipelines-bio in openpipeline/mapping/multi_star_to_h5mu

349
genetic_demux/freebayes
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/freebayes

348
integrate_add_metadata
Published Sep 27, 2022 by openpipelines-bio in integrate_add_metadata

347
feature_annotation/score_genes_scanpy
Published Aug 30, 2024 by openpipelines-bio in openpipeline/feature_annotation/score_genes_scanpy

347