openpipelines-bio

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30 packages

genetic_demux/freemuxlet
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/freemuxlet

347
mapping/star_align
Published Aug 30, 2024 by openpipelines-bio in openpipeline/mapping/star_align

347
transform/bpcells_regress_out
Published Aug 30, 2024 by openpipelines-bio in openpipeline/transform/bpcells_regress_out

346
dimred/lsi
Published Sep 25, 2024 by openpipelines-bio in openpipeline/dimred/lsi

345
transform/tfidf
Published Sep 26, 2024 by openpipelines-bio in openpipeline/transform/tfidf

339
scgpt/binning
Published Apr 25, 2024 by openpipelines-bio in scgpt/binning

332
annotate/celltypist
Published Aug 30, 2024 by openpipelines-bio in openpipeline/annotate/celltypist

316
scgpt/pad_tokenize
Published Apr 25, 2024 by openpipelines-bio in scgpt/pad_tokenize

309
scgpt/cross_check_genes
Published Apr 25, 2024 by openpipelines-bio in scgpt/cross_check_genes

304
qc/calculate_atac_qc_metrics
Published Dec 13, 2024 by openpipelines-bio in openpipeline/qc/calculate_atac_qc_metrics

301
projection_scvelo
Published Sep 1, 2022 by openpipelines-bio in projection_scvelo

300
normalize_lognorm
Published Apr 4, 2022 by openpipelines-bio in normalize_lognorm

300
scgpt/embedding
Published Apr 25, 2024 by openpipelines-bio in scgpt/embedding

299
projection_velocyto
Published Sep 1, 2022 by openpipelines-bio in projection_velocyto

296
convert_convert_h5ad_to_seurat
Published Apr 4, 2022 by openpipelines-bio in convert_convert_h5ad_to_seurat

292
preprocess_regress_out
Published Apr 4, 2022 by openpipelines-bio in preprocess_regress_out

292
metadata/duplicate_obs
Published Nov 21, 2024 by openpipelines-bio in openpipeline/metadata/duplicate_obs

285
dataflow/split_h5mu_train_test
Published Aug 30, 2024 by openpipelines-bio in openpipeline/dataflow/split_h5mu_train_test

283
genetic_demux/bcftools
Published Aug 30, 2024 by openpipelines-bio in openpipeline/genetic_demux/bcftools

282
convert/from_bd_to_10x_molecular_barcode_tags
Published Aug 30, 2024 by openpipelines-bio in openpipeline/convert/from_bd_to_10x_molecular_barcode_tags

282
compression/tar_extract
Published Aug 30, 2024 by openpipelines-bio in openpipeline/compression/tar_extract

282
mapping/htseq_count_to_h5mu
Published Aug 30, 2024 by openpipelines-bio in openpipeline/mapping/htseq_count_to_h5mu

282
velocity/velocyto
Published Aug 30, 2024 by openpipelines-bio in openpipeline/velocity/velocyto

281
feature_annotation/score_genes_cell_cycle_scanpy
Published Aug 30, 2024 by openpipelines-bio in openpipeline/feature_annotation/score_genes_cell_cycle_scanpy

281
compression/compress_h5mu
Published Aug 30, 2024 by openpipelines-bio in openpipeline/compression/compress_h5mu

281
download/sync_test_resources
Published Aug 30, 2024 by openpipelines-bio in openpipeline/download/sync_test_resources

272
reference/build_cellranger_arc_reference
Published Apr 25, 2024 by openpipelines-bio in reference/build_cellranger_arc_reference

271
demux/cellranger_atac_mkfastq
Published Apr 25, 2024 by openpipelines-bio in demux/cellranger_atac_mkfastq

264
mapping/samtools_sort
Published Aug 30, 2024 by openpipelines-bio in openpipeline/mapping/samtools_sort

260
interpret/lianapy
Published Aug 30, 2024 by openpipelines-bio in openpipeline/interpret/lianapy

260