Open Problems in Single-Cell Analysis
30 packages
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methods_cell_type_annotation/ssamPublished
Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing1.11k -
metrics/flowsom_mapping_similarityPublished
May 22, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration1.05k -
metrics/ks_statistic_sc_featuresPublished
Aug 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators1.01k -
process_datasets/generate_sim_spatialclusterPublished
Aug 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators1k -
metrics/ks_statistic_gene_cellPublished
Jul 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators933 -
metrics/tf_bindingPublished
Oct 8, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference932 -
methods_count_aggregation/basic_count_aggregationPublished
Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing923 -
metrics/distance_correlationPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction882 -
metrics/corankingPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction872 -
methods_qc_filter/basic_qc_filterPublished
Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing869 -
metrics/n_inconsistent_peaksPublished
Mar 6, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration830 -
methods_calculate_cell_volume/alpha_shapesPublished
Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing819 -
metrics/ks_statistic_spatialPublished
Aug 6, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators796 -
methods_transcript_assignment/basic_transcript_assignmentPublished
Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing782 -
metrics/density_preservationPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction760 -
methods_normalization/normalize_by_volumePublished
Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing751 -
methods_expression_correction/no_correctionPublished
Sep 21, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing747 -
methods_data_aggregation/aggregate_spatial_dataPublished
Oct 18, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing731 -
metrics/qualityPublished
Oct 18, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing708 -
methods_transcript_assignment/pciseqPublished
Sep 14, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing653 -
metrics/clustering_performancePublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction650 -
methods_transcript_assignment/baysorPublished
Sep 13, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing640 -
metrics/kbet_pg_labelPublished
Feb 28, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration599 -
metrics/kbet_pgPublished
Feb 28, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration595 -
methods_cell_type_annotation/taccoPublished
Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing595 -
metrics/brasPublished
Jul 30, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration572 -
metrics/tf_recoveryPublished
Oct 8, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference563